coat_protein

Euk-Vir

Hydrangea_chlorotic_mottle_virus

coat_protein__YP_002985640__Hydrangea_chlorotic_mottle_virus__375546

Identity

74.2 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Betaflexiviridae› Carlavirus› Hydrangea_chlorotic_mottle_virus

TaxID: 375546

View cluster (87 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 164-271

PDB

Domain cluster: rep: capsid_protein__YP_009552766__Turtle_grass_virus_X__2292642__D115-201

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00286.26 best	Flexi_CP	112.2	2.60e-32	82.4%	62.3%

D2 medium residues 112-163

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00286.26 best	Flexi_CP	35.5	1.30e-08	98.1%	36.2%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1tj7A03	1.10.40.30	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain)	0.63	50.0	4.65e-01	94.2%	70.4%
3fdqA01	1.20.120.1030	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain	0.61	48.0	3.78e-01	92.3%	79.5%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4307412	181.1.1.27 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › ATP-cone	0.63	51.0	4.38e-01	92.3%	60.0%
3524719	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.62	45.0	4.05e-01	76.9%	77.3%
4146096	181.1.1.0 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins	0.62	49.0	4.40e-01	92.3%	62.5%
4947232	4953.1.1.0 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like	0.62	50.0	4.42e-01	94.2%	62.5%
3970102	4953.1.1.0 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like	0.61	50.0	4.36e-01	96.2%	63.5%
5011426	4953.1.1.2 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C	0.59	48.0	4.19e-01	96.2%	62.4%
3929094	130.1.1.0 ↗	alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif	0.53	37.0	3.56e-01	75.0%	81.7%