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coat_protein
Euk-VirKalanchoe_latent_virus
coat_protein__YP_003075962__Kalanchoe_latent_virus__132477
Identity
- Accession:
- YP_003075962 ↗
- Protein ID:
- coat_protein
- Kingdom:
- euk
Quality
75.7
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Tymovirales›
Betaflexiviridae›
Carlavirus›
Kalanchoe_latent_virus
TaxID: 132477
Cluster
View cluster (87 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 87-150
Domain cluster:
rep: coat_protein__YP_002985640__Hydrangea_chlorotic_mottle_virus__375546__D112-163
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00286.26 best | Flexi_CP | 36.0 | 8.60e-09 | 82.8% | 37.0% |
D2
medium
residues 151-267
Domain cluster:
rep: capsid_protein__YP_009552766__Turtle_grass_virus_X__2292642__D115-201
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00286.26 best | Flexi_CP | 113.2 | 1.30e-32 | 74.4% | 60.9% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4nqfA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 35.0 | 3.29e-01 | 77.8% | 54.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2775588 | 3143.1.1.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Flexi_CP | 0.89 | 84.0 | 6.78e-01 | 97.4% | 64.8% |
| 1722663 | 3143.1.1.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Flexi_CP | 0.88 | 84.0 | 6.61e-01 | 100.0% | 62.7% |
| 1818174 | 3143.1.1.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Flexi_CP | 0.82 | 73.0 | 5.93e-01 | 94.0% | 61.3% |
| 5004013 | 601.7.1.69 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › AAA_13 | 0.52 | 33.0 | 3.29e-01 | 86.3% | 59.2% |
| 3496406 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 38.0 | 3.66e-01 | 76.1% | 88.1% |