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coat_protein
Euk-VirSweet_potato_vein_clearing_virus
coat_protein__YP_004300272__Sweet_potato_vein_clearing_virus__995049
Identity
- Accession:
- YP_004300272 ↗
- Protein ID:
- coat_protein
- Kingdom:
- euk
Quality
62.8
mean pLDDT
Taxonomy
Pararnavirae›
Artverviricota›
Revtraviricetes›
Ortervirales›
Caulimoviridae›
Solendovirus›
Sweet_potato_vein_clearing_virus
TaxID: 995049
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-85
D2
medium
residues 321-434
Domain cluster:
rep: putative_coat_protein__NP_569139__Tobacco_vein_clearing_virus__107324__D233-327
D3
medium
residues 435-525
Domain cluster:
rep: coat_protein_movement_protein__YP_004347414__Sweet_potato_collusive_virus__930168__D560-659
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22909.2 best | Caulimovir_coat_dom | 65.2 | 8.90e-18 | 100.0% | 80.5% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cazB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.65 | 43.0 | 3.27e-01 | 97.8% | 29.0% |
| 3kuqA00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.64 | 45.0 | 3.55e-01 | 72.5% | 40.6% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.63 | 32.0 | 3.82e-01 | 78.0% | 71.0% |
| 5ha6B00 | 1.10.287.210 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 38.0 | 3.99e-01 | 97.8% | 72.2% |
| 1wn0A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.59 | 50.0 | 4.43e-01 | 93.4% | 67.2% |
| 5uh5D02 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.58 | 44.0 | 3.86e-01 | 81.3% | 74.6% |
| 4kwaB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 39.0 | 3.03e-01 | 90.1% | 32.3% |
| 6vvoC03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.58 | 43.0 | 4.39e-01 | 82.4% | 89.0% |
| 2vmaA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.57 | 49.0 | 4.53e-01 | 98.9% | 94.3% |
| 3f1xA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.56 | 42.0 | 3.68e-01 | 82.4% | 89.9% |
| 4ewcA03 | 1.20.120.1660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.56 | 41.0 | 4.50e-01 | 81.3% | 94.7% |
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 41.0 | 3.68e-01 | 78.0% | 98.4% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.54 | 40.0 | 3.85e-01 | 90.1% | 69.3% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.53 | 37.0 | 3.96e-01 | 90.1% | 87.8% |
| 3llkA01 | 1.20.120.1960 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain | 0.53 | 40.0 | 4.00e-01 | 83.5% | 82.7% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.50 | 46.0 | 4.34e-01 | 100.0% | 92.7% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.50 | 42.0 | 3.68e-01 | 90.1% | 98.5% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4358538 | 4958.1.1.1 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 0.73 | 44.0 | 3.54e-01 | 94.5% | 31.4% |
| 3784055 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.71 | 47.0 | 4.16e-01 | 97.8% | 47.7% |
| 3960319 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.70 | 51.0 | 4.20e-01 | 97.8% | 41.8% |
| 3244235 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.68 | 40.0 | 3.96e-01 | 86.8% | 53.0% |
| 3596839 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.66 | 32.0 | 3.97e-01 | 79.1% | 74.5% |
| 3463858 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.65 | 40.0 | 3.92e-01 | 85.7% | 56.0% |
| 3800855 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.65 | 54.0 | 4.70e-01 | 93.4% | 93.8% |
| 3812000 | 7023.1.1.3 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › MBOAT_2 | 0.61 | 40.0 | 3.60e-01 | 95.6% | 48.8% |
| 3884761 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.60 | 45.0 | 3.03e-01 | 76.9% | 38.0% |
| 4298800 | 4958.1.1.1 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 0.59 | 43.0 | 3.19e-01 | 78.0% | 43.3% |
| 3603648 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.59 | 38.0 | 3.85e-01 | 89.0% | 67.0% |
| 4360452 | 4958.1.1.1 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 0.59 | 43.0 | 3.51e-01 | 78.0% | 69.1% |
| 3978264 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.58 | 42.0 | 3.50e-01 | 74.7% | 46.7% |
| 3840125 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 46.0 | 4.44e-01 | 100.0% | 74.3% |
| 4259224 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.58 | 44.0 | 3.70e-01 | 98.9% | 47.1% |
| 3959563 | 4958.1.1.0 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit | 0.58 | 43.0 | 3.21e-01 | 78.0% | 45.1% |
| None | — | 0.58 | 44.0 | 3.82e-01 | 81.3% | 75.7% | |
| 3635280 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.57 | 50.0 | 4.41e-01 | 98.9% | 83.7% |
| 4846601 | 603.5.1.1 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like › FlgN | 0.56 | 42.0 | 3.77e-01 | 78.0% | 93.4% |
| 3088275 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.56 | 43.0 | 4.27e-01 | 98.9% | 78.9% |
| 3607135 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.56 | 46.0 | 4.00e-01 | 97.8% | 59.3% |
| 3364492 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 48.0 | 4.04e-01 | 100.0% | 78.0% |
| 3583859 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 43.0 | 3.51e-01 | 90.1% | 49.4% |
| 3913790 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.52 | 42.0 | 3.99e-01 | 94.5% | 90.4% |
| 3580281 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 46.0 | 4.42e-01 | 98.9% | 96.2% |
| 5047547 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.51 | 46.0 | 4.23e-01 | 98.9% | 80.0% |
| 3356933 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.51 | 45.0 | 3.78e-01 | 97.8% | 81.3% |
| 3611416 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 45.0 | 3.26e-01 | 100.0% | 59.6% |
| 5020701 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.50 | 45.0 | 3.31e-01 | 97.8% | 69.8% |
| 4175809 | 5086.1.1.88 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_CyaD | 0.50 | 44.0 | 3.55e-01 | 93.4% | 87.3% |