←Back to structures

coat_protein

Euk-Vir

Fig_fleck-associated_virus

coat_protein__YP_004300303__Fig_fleck-associated_virus__548908

Identity

Accession:
YP_004300303 ↗
Protein ID:
coat_protein
Kingdom:
euk

Quality

77.2 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Tymoviridae› Maculavirus› Fig_fleck-associated_virus

TaxID: 548908

Cluster

View cluster (106 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 62-82_114-153
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3v42A01 3.40.50.12430 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 43.0 3.48e-01 72.1% 62.4%
3w5mA04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 3.65e-01 100.0% 65.8%
4go6B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.67e-01 88.5% 80.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3500664 11.1.1.13 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Motile_Sperm 0.60 47.0 3.88e-01 88.5% 90.0%
3498504 5.1.4.301 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7 0.51 41.0 2.57e-01 95.1% 93.9%
D2 medium residues 83-113_154-216
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00983.25 best Tymo_coat 53.7 3.30e-14 69.2% 33.0%
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1auyB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.90 86.0 6.58e-01 100.0% 68.8%
1e57B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.88 84.0 6.52e-01 100.0% 71.0%
1smvC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.76 71.0 5.26e-01 100.0% 73.4%
2ztnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.76 69.0 5.48e-01 100.0% 80.0%
1c8nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.76 70.0 5.23e-01 100.0% 71.2%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.74 69.0 5.61e-01 100.0% 81.2%
3jb8A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 67.0 5.28e-01 100.0% 81.6%
5yl1A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.72 65.0 5.20e-01 98.9% 81.2%
4fy1100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.72 66.0 4.95e-01 100.0% 70.5%
1f2nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.72 66.0 4.98e-01 100.0% 71.7%
1ng0C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 65.0 4.93e-01 100.0% 72.0%
2tbvA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 65.0 4.56e-01 100.0% 46.5%
4llfD01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 65.0 5.22e-01 100.0% 74.2%
4rft000 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 64.0 5.30e-01 100.0% 77.9%
1s58A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.66 58.0 3.67e-01 100.0% 85.1%
4qpiC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 58.0 4.34e-01 100.0% 63.4%
5aca300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 58.0 4.47e-01 100.0% 62.6%
2ws9201 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 57.0 4.50e-01 98.9% 72.8%
1b35A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 56.0 4.12e-01 100.0% 68.5%
1stmA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.61 54.0 4.77e-01 100.0% 81.6%
5j09A00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.60 52.0 4.28e-01 96.8% 80.1%
5wm1A05 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 49.0 4.60e-01 96.8% 81.2%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.57 25.0 3.04e-01 73.4% 60.3%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 46.0 4.43e-01 95.7% 78.7%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.56 42.0 3.96e-01 95.7% 64.2%
3hrzC01 2.20.210.20 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › 0.55 30.0 3.74e-01 76.6% 98.0%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 48.0 4.51e-01 98.9% 78.2%
4lsdF00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 4.00e-01 94.7% 74.5%
4do8A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.55 27.0 3.06e-01 77.7% 60.6%
2wliA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.55 47.0 3.98e-01 96.8% 67.7%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.54 48.0 4.39e-01 97.9% 80.5%
3og6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 4.05e-01 96.8% 77.8%
1d0nA03 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 30.0 2.82e-01 83.0% 42.1%
1yi9A01 2.60.120.310 Mainly Beta › Sandwich › Jelly Rolls › Copper type II, ascorbate-dependent monooxygenase, N-terminal domain 0.54 46.0 3.96e-01 96.8% 73.7%
3r8qA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 34.0 3.50e-01 97.9% 65.6%
7mjrA02 2.60.120.240 Mainly Beta › Sandwich › Jelly Rolls › Protective antigen, heptamerisation domain 0.54 46.0 3.72e-01 97.9% 50.5%
1n26A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.99e-01 92.6% 75.0%
1f6fB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 4.03e-01 92.6% 79.4%
2dn7A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.72e-01 96.8% 69.2%
8dkuA02 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.52 44.0 3.86e-01 94.7% 69.4%
2o6cA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.52 46.0 3.88e-01 98.9% 81.0%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.52 35.0 3.84e-01 97.9% 98.5%
4rdbA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 3.84e-01 95.7% 79.9%
2e3vA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.85e-01 96.8% 74.8%
2edyA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.75e-01 93.6% 72.8%
1fyhB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.93e-01 94.7% 79.6%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
296002 10.2.1.15 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat 0.90 86.0 6.57e-01 100.0% 68.8%
2862065 10.2.1.15 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat 0.89 86.0 6.72e-01 100.0% 74.3%
31171 10.2.1.15 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat 0.87 83.0 6.38e-01 100.0% 69.5%
1232 10.2.1.7 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.76 69.0 5.38e-01 100.0% 83.2%
1234 10.2.1.7 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.72 65.0 5.12e-01 100.0% 81.8%
3609926 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.63 52.0 4.68e-01 96.8% 65.4%
3734713 11.1.1.866 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Rha78A_N 0.63 45.0 4.15e-01 98.9% 57.6%
4027527 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.60 41.0 4.26e-01 97.9% 77.6%
3347390 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.07e-01 94.7% 76.5%
4027402 929.1.1.7 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin › PF29972 0.58 47.0 4.79e-01 96.8% 91.1%
3605842 11.1.1.67 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.57 50.0 4.02e-01 97.9% 63.8%
3593239 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 50.0 4.39e-01 97.9% 84.3%
3716614 11.1.1.67 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.57 50.0 4.55e-01 97.9% 84.8%
4028543 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.57 36.0 3.90e-01 94.7% 78.7%
3547918 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.56 36.0 3.25e-01 94.7% 43.6%
3252870 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 47.0 3.82e-01 91.5% 92.2%
4332271 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.56 42.0 3.90e-01 96.8% 62.6%
3249076 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 4.16e-01 96.8% 89.0%
3249509 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.55 47.0 4.06e-01 97.9% 78.1%
3929431 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 48.0 3.24e-01 95.7% 52.8%
4928097 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 4.23e-01 98.9% 83.2%
4952062 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 46.0 3.78e-01 95.7% 89.4%
3719525 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.54 47.0 2.92e-01 96.8% 33.1%
3927167 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.17e-01 96.8% 80.8%
3559532 3886.1.1.2 ↗ alpha duplicates or obligate multimers › Virulence factor sHIP › Virulence factor sHIP › Virulence factor sHIP › BBS2_GAE 0.54 43.0 4.13e-01 96.8% 74.5%
4000861 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 40.0 3.99e-01 94.7% 77.9%
3182884 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 3.71e-01 98.9% 88.5%
3706841 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.41e-01 97.9% 87.3%
5033505 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 4.26e-01 94.7% 88.2%
3275066 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.53 45.0 4.08e-01 96.8% 81.5%
3905578 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.98e-01 94.7% 75.2%
3716190 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.42e-01 94.7% 53.3%
5044312 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.85e-01 95.7% 76.0%
3967141 327.16.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin 0.51 38.0 2.79e-01 78.7% 82.9%
3248676 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.83e-01 95.7% 75.2%
3692094 11.1.1.60 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Vps26 0.51 42.0 3.55e-01 95.7% 79.4%
393055 11.1.1.229 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IRK_C 0.51 44.0 3.75e-01 98.9% 66.3%
2420836 10.9.1.0 ↗ beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin 0.51 42.0 4.02e-01 100.0% 77.0%
3256398 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 3.70e-01 92.6% 75.8%
4086531 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.50 42.0 2.81e-01 96.8% 32.3%
3601389 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 3.39e-01 96.8% 62.6%
3711130 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.50 41.0 3.33e-01 98.9% 45.9%
4945637 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 3.85e-01 96.8% 80.0%