←Back to structures

coat_protein

Euk-Vir

Persimmon_cryptic_virus

coat_protein__YP_006390090__Persimmon_cryptic_virus__1183241

Identity

Accession:
YP_006390090 ↗
Protein ID:
coat_protein
Kingdom:
euk

Quality

70.2 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Partitiviridae› Persimmon_cryptic_virus

TaxID: 1183241

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 67-237
PDB
Domain cluster: rep: putative_coat_protein__YP_009466860__Pepper_cryptic_virus_1__369643__D52-225
D2 medium residues 238-288_392-415
PDB
Domain cluster: representative
D3 medium residues 289-333_376-391
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4n4rB00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.61 42.0 3.07e-01 78.7% 28.5%
3hvnA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.59 44.0 4.63e-01 95.1% 94.3%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.59 39.0 2.82e-01 78.7% 23.9%
1pfoA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.54 39.0 4.07e-01 95.1% 94.3%
7t4dA01 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.54 45.0 2.95e-01 98.4% 79.7%
1f8vC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 2.86e-01 100.0% 76.8%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.52 38.0 3.96e-01 95.1% 94.3%
1novA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 2.78e-01 98.4% 81.2%
7z2bK01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.50 35.0 2.30e-01 72.1% 48.2%
4mpoB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.50 43.0 3.30e-01 98.4% 93.9%
2gx8A02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 38.0 3.39e-01 93.4% 54.5%
2xefA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.50 44.0 2.82e-01 100.0% 32.2%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3664751 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.61 47.0 4.06e-01 85.2% 89.0%
1919434 3274.1.1.1 ↗ extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 0.60 41.0 3.69e-01 70.5% 62.8%
3210904 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.60 50.0 3.87e-01 91.8% 82.2%
4882343 2003.1.1.59 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 0.59 40.0 2.53e-01 78.7% 12.7%
4071803 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.59 50.0 3.64e-01 100.0% 49.5%
3175102 2008.1.1.79 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Pet127 0.58 47.0 2.98e-01 93.4% 66.8%
None — 0.58 40.0 2.42e-01 80.3% 10.9%
4029423 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.58 51.0 3.86e-01 100.0% 62.0%
3254845 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 39.0 3.08e-01 72.1% 70.8%
3495218 922.1.1.9 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_2 0.55 37.0 4.07e-01 80.3% 86.0%
3850354 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.55 42.0 3.42e-01 88.5% 78.5%
3723863 4002.1.1.0 ↗ alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes 0.55 45.0 3.09e-01 93.4% 64.5%
3164234 205.1.1.100 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4, Fer4_2, Fer4_11 0.54 37.0 2.60e-01 72.1% 58.5%
2833984 11.13.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.54 45.0 2.94e-01 98.4% 77.2%
3246449 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.53 44.0 3.21e-01 100.0% 57.0%
5078762 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 43.0 2.74e-01 90.2% 39.0%
3264178 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 46.0 3.55e-01 98.4% 70.7%
3375428 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 46.0 3.09e-01 98.4% 40.8%
3650961 10.35.1.1 ↗ beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV,ERGIC_N 0.53 44.0 3.06e-01 100.0% 85.3%
None — 0.50 43.0 3.45e-01 100.0% 58.5%
3648159 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 41.0 3.36e-01 96.7% 60.0%
3637417 4099.1.1.10 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.50 40.0 2.77e-01 86.9% 45.2%
4973231 304.48.1.20 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1 0.50 34.0 2.35e-01 72.1% 19.6%