coat_protein

Euk-Vir

Grapevine_virus_F

coat_protein__YP_006590068__Grapevine_virus_F__1221437

Identity

83.8 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Betaflexiviridae› Vitivirus› Grapevine_virus_F

TaxID: 1221437

View cluster (18 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-127

PDB

Domain cluster: rep: coat_protein__YP_002117778__Grapevine_virus_E__516956__D1-127

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05892.18 best	Tricho_coat	115.8	2.70e-33	95.3%	64.4%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4hzuS00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.55	42.0	3.88e-01	81.1%	98.8%
2crbA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.53	33.0	3.65e-01	93.7%	79.4%
3dbgA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.52	43.0	3.17e-01	91.3%	71.2%
4dwlA00	1.20.1440.60	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence	0.52	38.0	4.07e-01	95.3%	91.7%
5b00A00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.51	39.0	3.17e-01	81.1%	66.3%
3fhnA02	1.20.58.1420	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain B	0.51	37.0	3.89e-01	100.0%	84.6%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5052743	140.1.1.5 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1	0.56	37.0	3.25e-01	98.4%	44.2%
3182492	5050.1.1.1 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr	0.52	39.0	3.32e-01	78.7%	89.8%
3947843	5051.1.1.2 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease	0.51	43.0	3.07e-01	96.1%	89.1%

D2 high residues 132-196

PDB

Domain cluster: rep: capsid_protein__YP_008997792__Apricot_vein_clearing_associated_virus__1343920__D148-220

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05892.18 best	Tricho_coat	91.6	7.20e-26	100.0%	31.2%