←Back to structures

coat_protein

Euk-Vir

Diuris_virus_B

coat_protein__YP_006908993__Diuris_virus_B__1247116

Identity

Accession:: YP_006908993 ↗
Protein ID:: coat_protein
Kingdom:: euk

Quality

78.8 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Betaflexiviridae› Divavirus› Diuris_virus_B

TaxID: 1247116

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-119

PDB

Domain cluster: rep: ORF3__YP_009103998__Carrot_Ch_virus_2__1425362__D3-114

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05892.18 best	Tricho_coat	70.8	1.70e-19	99.2%	53.5%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3d2fA04	3.90.640.10	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4	0.71	41.0	4.83e-01	76.5%	81.0%
6rzqA04	3.90.640.10	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4	0.69	40.0	4.66e-01	75.6%	81.2%
4gniA04	3.90.640.10	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4	0.68	40.0	4.62e-01	75.6%	81.4%
1k8kA04	3.90.640.10	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4	0.55	35.0	3.91e-01	73.1%	82.6%
4l00A02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.53	45.0	3.99e-01	95.0%	97.2%
4djhA01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.52	39.0	2.98e-01	80.7%	79.4%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4002839	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.57	47.0	3.83e-01	87.4%	58.1%
3255532	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.57	45.0	3.76e-01	86.6%	49.3%
2764890	4322.1.1.1 ↗	a+b complex topology › Flu NP-like › Flu NP-like › Flu NP-like › Flu_NP	0.56	45.0	4.40e-01	94.1%	77.6%
3452171	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.56	46.0	3.69e-01	87.4%	56.4%
3598526	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.56	45.0	3.53e-01	87.4%	52.7%
3707811	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	41.0	2.89e-01	79.8%	64.0%
3241070	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.52	39.0	3.18e-01	79.8%	92.7%
4990006	3355.1.1.14 ↗	alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › Lactate_perm	0.51	44.0	3.05e-01	99.2%	69.6%
4985406	878.1.1.1 ↗	a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194	0.51	30.0	3.65e-01	82.4%	88.6%
4183868	878.1.1.1 ↗	a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194	0.50	27.0	3.33e-01	84.0%	79.7%

D2 medium residues 120-183

PDB

Domain cluster: rep: coat_protein__YP_006908998__Diuris_virus_A__1247115__D121-183

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05892.18 best	Tricho_coat	54.4	1.80e-14	100.0%	27.2%