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coat_protein

Euk-Vir

Diuris_virus_A

coat_protein__YP_006908998__Diuris_virus_A__1247115

Identity

Accession:: YP_006908998 ↗
Protein ID:: coat_protein
Kingdom:: euk

Quality

77.4 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Betaflexiviridae› Divavirus› Diuris_virus_A

TaxID: 1247115

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-120

PDB

Domain cluster: rep: ORF3__YP_009103998__Carrot_Ch_virus_2__1425362__D3-114

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05892.18 best	Tricho_coat	85.7	4.70e-24	99.2%	55.9%

D2 medium residues 121-183

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05892.18 best	Tricho_coat	53.2	4.10e-14	100.0%	26.7%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ozbB01	1.10.287.4070	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.68	59.0	4.67e-01	98.4%	82.4%
1u9lB00	1.10.150.20	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain	0.67	50.0	4.85e-01	79.4%	95.7%
3al2A01	3.40.50.10190	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain	0.64	50.0	4.02e-01	84.1%	95.9%
7e24A01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.63	50.0	3.36e-01	85.7%	46.9%
7wj9A01	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.62	45.0	2.88e-01	74.6%	20.8%
4jgbB00	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.58	45.0	3.16e-01	84.1%	62.9%
6qpqB00	1.10.10.580	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E	0.53	41.0	3.74e-01	81.0%	91.4%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3825046	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.76	63.0	4.85e-01	93.7%	74.5%
3582048	4106.1.1.1 ↗	few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC	0.75	64.0	4.42e-01	95.2%	31.2%
3208401	5069.1.1.4 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct	0.73	59.0	3.85e-01	85.7%	96.0%
3797399	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.73	65.0	4.92e-01	100.0%	45.3%
3475284	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.71	63.0	4.25e-01	100.0%	69.8%
3788645	109.4.1.528 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF	0.67	59.0	3.32e-01	95.2%	14.2%
3546062	376.1.2.39 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › RHG29_45_N	0.65	50.0	4.11e-01	95.2%	46.4%
3507118	7015.1.1.1 ↗	alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC	0.65	55.0	3.85e-01	93.7%	35.6%
3390444	4106.1.1.1 ↗	few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC	0.65	59.0	4.01e-01	100.0%	66.4%
3218304	101.1.4.4 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CUT	0.63	47.0	4.06e-01	77.8%	60.0%
3898895	601.1.1.68 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › RHG29_45_N	0.61	51.0	4.11e-01	90.5%	82.6%
3404184	5067.1.1.5 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing	0.55	46.0	3.16e-01	96.8%	66.5%