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coat_protein
Euk-VirAndean_potato_mild_mosaic_virus
coat_protein__YP_007517184__Andean_potato_mild_mosaic_virus__1296569
Identity
- Accession:
- YP_007517184 ↗
- Protein ID:
- coat_protein
- Kingdom:
- euk
Quality
81.9
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Tymovirales›
Tymoviridae›
Tymovirus›
Andean_potato_mild_mosaic_virus
TaxID: 1296569
Cluster
View cluster (99 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 86-114_137-182
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1auyB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.94 | 89.0 | 6.38e-01 | 100.0% | 51.3% |
| 4cp2A00 | 2.60.120.1560 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 45.0 | 3.30e-01 | 93.3% | 55.7% |
| 2i9yA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 38.0 | 3.00e-01 | 96.0% | 38.9% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 31171 | 10.2.1.15 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat | 0.93 | 88.0 | 6.35e-01 | 100.0% | 51.9% |
| 3628325 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.60 | 33.0 | 3.52e-01 | 88.0% | 61.5% |
| 3411905 | 327.11.2.20 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › BICC1_KH | 0.58 | 31.0 | 3.35e-01 | 85.3% | 60.0% |
| 4069329 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.54 | 34.0 | 3.33e-01 | 90.7% | 57.5% |
| 3655963 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 30.0 | 3.13e-01 | 88.0% | 61.4% |
| 3203256 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.51 | 36.0 | 2.36e-01 | 78.7% | 53.5% |
| 4682556 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.50 | 34.0 | 3.41e-01 | 94.7% | 66.3% |