coat_protein

Euk-Vir

Red_clover_cryptic_virus_2

coat_protein__YP_007889824__Red_clover_cryptic_virus_2__1323524

Identity

53.3 mean pLDDT

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Partitiviridae› Betapartitivirus› Red_clover_cryptic_virus_2

TaxID: 1323524

View cluster (9 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 62-169_309-335

PDB

Domain cluster: rep: putative_coat_protein__YP_009551640__Bipolaris_maydis_partitivirus_2__2483307__D88-220_329-367

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25666.2 best	Partiti_capsid	171.5	4.70e-50	81.5%	17.1%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4c0aA02	1.10.1000.11	Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2	0.60	41.0	4.35e-01	99.3%	79.7%
1a7wA00	1.10.20.10	Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A	0.58	28.0	3.81e-01	94.8%	91.2%
2o5rA04	1.10.8.70	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1	0.54	22.0	3.27e-01	88.1%	97.9%
3um7B01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.53	31.0	3.54e-01	80.0%	78.4%
2pvqA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.52	33.0	3.71e-01	87.4%	81.1%
4m70B00	1.10.246.200	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain	0.52	31.0	3.66e-01	84.4%	86.8%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3421392	109.4.1.450 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF247	0.59	44.0	3.44e-01	95.6%	35.8%
3725613	101.1.6.0 ↗	alpha arrays › HTH › HTH › TrpR	0.56	35.0	3.82e-01	95.6%	77.1%
3738994	168.1.1.1 ↗	alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7	0.55	40.0	3.50e-01	100.0%	51.3%
3839858	3962.1.1.4 ↗	alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit › ISP_coupler	0.54	41.0	4.17e-01	80.0%	85.9%
1687153	3962.2.1.1 ↗	alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › Helical domain in type ISP restriction-modification enzymes › Helical domain in type ISP restriction-modification enzymes › ISP_coupler	0.54	41.0	4.00e-01	80.0%	85.2%
3924442	604.6.1.1 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT	0.53	33.0	3.59e-01	85.9%	75.5%

D2 medium residues 170-308

PDB

Domain cluster: rep: putative_capsid_protein__YP_003104769__Primula_malacoides_virus_China_Mar2007__479713__D178-292_349-369

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25666.2 best	Partiti_capsid	201.5	3.90e-59	100.0%	22.2%

D3 medium residues 581-673

PDB