coat_protein

Euk-Vir

Red_clover_cryptic_virus_1

coat_protein__YP_008719883__Red_clover_cryptic_virus_1__1408894

Identity

60.0 mean pLDDT

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Partitiviridae› Red_clover_cryptic_virus_1

TaxID: 1408894

View cluster (9 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 356-486

PDB

D2 medium residues 85-146

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2cpmA00	3.30.1370.50	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain	0.69	40.0	3.44e-01	74.2%	37.2%
1whuA00	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.63	49.0	4.20e-01	93.5%	51.0%
2dbbB01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.62	32.0	3.40e-01	90.3%	56.4%
1z6oA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.61	51.0	3.57e-01	96.8%	53.3%
4cfsA02	1.10.210.20	Mainly Alpha › Orthogonal Bundle › Uteroglobin ›	0.54	38.0	3.71e-01	75.8%	100.0%
3w0lD01	1.10.8.1080	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.52	34.0	2.96e-01	72.6%	41.6%
5a2gA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.52	42.0	2.59e-01	100.0%	32.1%
4dmvA01	1.20.58.1190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	38.0	3.53e-01	85.5%	60.0%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3970007	3502.1.1.0 ↗	alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein	0.77	45.0	4.18e-01	79.0%	48.0%
4071215	101.1.8.1 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase	0.70	42.0	4.41e-01	83.9%	67.3%
3970206	857.1.1.0 ↗	a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like	0.63	43.0	4.30e-01	83.9%	67.7%
3215306	3826.1.1.0 ↗	alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR)	0.61	46.0	4.22e-01	83.9%	67.1%
4027833	101.1.1.69 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_7	0.61	34.0	3.19e-01	71.0%	41.2%
4890756	102.1.1.120 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Spt6_S1	0.57	36.0	3.14e-01	74.2%	41.5%
3715217	11.2.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain	0.56	41.0	3.02e-01	85.5%	28.8%
4950284	5054.1.1.6 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH	0.56	42.0	3.64e-01	85.5%	90.5%
3798378	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.53	39.0	3.67e-01	77.4%	81.3%
4000123	101.1.1.3 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding	0.53	40.0	3.59e-01	80.6%	61.2%

D3 medium residues 147-200

PDB

Domain cluster: representative

D4 medium residues 201-351

PDB