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coat_protein

Euk-Vir

Ustilaginoidea_virens_RNA_virus_3

coat_protein__YP_009004155__Ustilaginoidea_virens_RNA_virus_3__1460374

Identity

Accession:: YP_009004155 ↗
Protein ID:: coat_protein
Kingdom:: euk

Quality

74.0 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Pseudototiviridae› Victorivirus› Ustilaginoidea_virens_RNA_virus_3

TaxID: 1460374

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 465-583_611-635

PDB

Domain cluster: rep: coat_protein__YP_009182166__Ustilaginoidea_virens_RNA_virus_5__1756615__D455-595_610-622

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	115.1	3.80e-33	85.4%	18.3%

D2 medium residues 17-72_452-464_584-610

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	33.9	1.40e-08	71.9%	9.8%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1m1cA00	3.90.1840.10	Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein	0.66	57.0	3.46e-01	96.9%	91.4%
4frxA01	2.40.160.10	Mainly Beta › Beta Barrel › Porin › Porin	0.58	45.0	2.96e-01	82.3%	100.0%
3i3tA00	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.57	46.0	3.24e-01	86.5%	60.7%
5cvmA00	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.56	45.0	3.17e-01	86.5%	56.2%
8bs9A01	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.56	46.0	3.21e-01	87.5%	60.0%
1r0uA00	2.40.128.20	Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain	0.56	40.0	3.51e-01	75.0%	93.0%
3waiA02	2.60.40.3390	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.55	35.0	3.58e-01	90.6%	66.7%
4gwmA02	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.54	37.0	3.16e-01	97.9%	42.1%
3gtyX02	3.10.50.30	Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain	0.53	41.0	4.37e-01	90.6%	94.0%
5chtB00	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.53	41.0	2.95e-01	85.4%	57.7%
1ywhA01	2.10.60.10	Mainly Beta › Ribbon › CD59 › CD59	0.52	39.0	4.19e-01	87.5%	92.6%
4hscX04	2.60.40.1430	Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4	0.52	35.0	3.36e-01	95.8%	60.0%
2gfoA00	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.52	41.0	2.79e-01	84.4%	58.1%
1hq6B00	3.50.20.10	Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B	0.50	41.0	3.15e-01	88.5%	41.2%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3508212	3115.1.1.6 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494	0.58	37.0	4.33e-01	79.2%	90.0%
4374005	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.57	33.0	3.16e-01	75.0%	47.8%
872	9.9.1.1 ↗	beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934	0.56	40.0	3.51e-01	75.0%	93.0%
3280008	3115.1.1.2 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288	0.55	44.0	4.55e-01	89.6%	92.2%
3892842	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.54	36.0	4.20e-01	80.2%	100.0%
4620869	1.1.5.57 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31	0.53	45.0	3.07e-01	93.8%	85.2%
3874464	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.53	38.0	2.58e-01	84.4%	20.6%
5034787	5084.5.3.17 ↗	beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › DUF5916	0.53	40.0	2.57e-01	80.2%	100.0%
4939638	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.53	45.0	3.89e-01	93.8%	78.7%
3619496	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.50	41.0	2.73e-01	87.5%	25.5%

D3 medium residues 73-87_240-306

PDB

Domain cluster: rep: coat_protein__YP_009072432__Botryosphaeria_dothidea_victorivirus_1__1547580__D233-273_286-308

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	98.0	5.80e-28	91.5%	10.2%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2fhxA00	3.60.15.10	Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	0.55	38.0	2.82e-01	73.2%	51.8%
1t16A00	2.40.160.60	Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX)	0.54	39.0	2.53e-01	76.8%	97.0%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4078351	247.1.1.34 ↗	a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › MBL_MAP1B	0.59	42.0	3.09e-01	75.6%	33.6%
4564092	101.8.1.1 ↗	alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f,Anticodon_2	0.56	43.0	3.14e-01	85.4%	90.5%

D4 medium residues 88-239

PDB

Domain cluster: rep: coat_protein__YP_009212847__Penicillium_aurantiogriseum_totivirus_1__1755467__D82-115_136-208_280-306

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	203.6	6.20e-60	100.0%	23.8%

D5 medium residues 318-444

PDB

Domain cluster: rep: coat_protein__YP_009072432__Botryosphaeria_dothidea_victorivirus_1__1547580__D309-450

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	133.2	1.20e-38	100.0%	19.7%