←Back to structures

coat_protein

Euk-Vir

Gentian_ovary_ringspot_virus

coat_protein__YP_009047253__Gentian_ovary_ringspot_virus__1920772

Identity

Accession:
YP_009047253 ↗
Protein ID:
coat_protein
Kingdom:
euk

Quality

72.4 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Virgaviridae› Goravirus› Gentian_ovary_ringspot_virus

TaxID: 1920772

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-125_141-188
PDB
Domain cluster: rep: hypothetical_protein__YP_009337424__Hubei_virga-like_virus_1__1923324__D95-184_198-245
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00721.28 best TMV_coat 63.7 3.50e-17 96.3% 95.2%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rmvA00 1.20.120.70 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Tobacco mosaic virus-like, coat protein 0.71 64.0 6.54e-01 99.4% 99.4%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 28.0 4.37e-01 80.2% 100.0%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.66 41.0 5.13e-01 93.8% 99.0%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 31.0 3.85e-01 85.8% 68.9%
3lbxB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 31.0 3.79e-01 86.4% 67.3%
2xq9A02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.61 44.0 4.99e-01 75.9% 98.3%
1b68A00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.61 46.0 4.93e-01 78.4% 100.0%
3cazB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.60 42.0 3.88e-01 71.6% 88.6%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.54 31.0 3.55e-01 89.5% 74.4%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.52 34.0 3.41e-01 96.3% 64.6%
4m7cB00 1.25.40.210 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain 0.50 40.0 3.74e-01 83.3% 93.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1681824 601.6.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › TMV-like viral coat proteins › TMV-like viral coat proteins › TMV_coat 0.88 85.0 8.19e-01 100.0% 93.8%
3449485 601.6.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › TMV-like viral coat proteins › TMV-like viral coat proteins › TMV_coat 0.85 59.0 6.98e-01 84.6% 100.0%
2989218 601.6.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › TMV-like viral coat proteins › TMV-like viral coat proteins › TMV_coat 0.80 65.0 6.99e-01 99.4% 100.0%
3394141 601.6.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › TMV-like viral coat proteins › TMV-like viral coat proteins › TMV_coat 0.77 68.0 7.07e-01 99.4% 100.0%
2080122 601.4.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › PilJ 0.64 43.0 5.08e-01 76.5% 100.0%
4045134 601.4.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › 4HB_MCP_1 0.63 48.0 5.32e-01 80.2% 97.7%
4881515 3684.1.1.0 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.62 44.0 4.90e-01 77.2% 92.9%
4000084 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.60 48.0 4.98e-01 83.3% 89.3%
4338795 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 32.0 3.21e-01 90.7% 49.4%
5010292 601.30.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.59 45.0 4.66e-01 78.4% 92.7%
3952765 192.29.1.179 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF26307 0.59 47.0 4.93e-01 82.1% 95.2%
5028028 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.58 40.0 4.36e-01 70.4% 85.2%
3466653 192.29.1.101 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Rx_N 0.55 37.0 4.26e-01 76.5% 96.5%
5054676 4323.1.1.0 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.54 39.0 4.35e-01 95.1% 96.8%
5059402 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.53 44.0 4.61e-01 90.1% 99.3%
3735143 3755.4.1.3 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Helo_like_N 0.51 40.0 4.29e-01 82.7% 100.0%