coat_protein

Euk-Vir

Prunus_virus_T

coat_protein__YP_009051686__Prunus_virus_T__1472425

Identity

75.4 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Betaflexiviridae› Tepovirus› Prunus_virus_T

TaxID: 1472425

View cluster (33 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-142

PDB

Domain cluster: rep: coat_protein__YP_002117778__Grapevine_virus_E__516956__D1-127

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05892.18 best	Tricho_coat	42.3	9.40e-11	98.6%	61.4%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ce7A00	1.10.1200.10	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like	0.61	35.0	4.19e-01	95.7%	85.6%
3le2A01	3.30.497.10	Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2	0.56	41.0	3.46e-01	77.5%	83.5%
4hstB03	1.10.1400.10	Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region	0.55	33.0	3.39e-01	87.7%	60.5%
1a31A03	3.90.15.10	Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3	0.55	38.0	3.70e-01	100.0%	64.0%
4i59A03	1.10.405.10	Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1	0.54	27.0	3.22e-01	100.0%	69.6%
1mtpA01	3.30.497.10	Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2	0.51	38.0	3.24e-01	77.5%	79.4%
4v2kA02	1.10.760.10	Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain	0.51	32.0	3.59e-01	100.0%	84.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3585138	4275.1.1.9 ↗	alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › PF26809	0.52	37.0	3.43e-01	72.5%	92.0%
3899102	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.51	45.0	3.07e-01	94.9%	66.0%

D2 high residues 153-219

PDB

Domain cluster: rep: coat_protein__YP_009552713__Lettuce_chordovirus_1__2200955__D189-243

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05892.18 best	Tricho_coat	64.6	1.30e-17	95.5%	27.7%