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coat_protein

Euk-Vir

Ustilaginoidea_virens_RNA_virus_5

coat_protein__YP_009182166__Ustilaginoidea_virens_RNA_virus_5__1756615

Identity

Accession:
YP_009182166 ↗
Protein ID:
coat_protein
Kingdom:
euk

Quality

73.8 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Pseudototiviridae› Victorivirus› Ustilaginoidea_virens_RNA_virus_5

TaxID: 1756615

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 77-307
PDB
Domain cluster: rep: coat_protein__YP_009212847__Penicillium_aurantiogriseum_totivirus_1__1755467__D82-115_136-208_280-306
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05518.18 best Totivirus_coat 325.9 5.80e-97 100.0% 36.1%
D2 high residues 455-595_610-622
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05518.18 best Totivirus_coat 157.4 6.00e-46 98.0% 22.4%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4aybL00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.58 34.0 4.24e-01 87.7% 96.7%
3f0hA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 29.0 3.61e-01 85.1% 78.1%
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.55 29.0 3.78e-01 83.1% 91.7%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4595919 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.61 34.0 4.37e-01 87.0% 94.4%
5078580 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.60 34.0 4.19e-01 87.7% 89.5%
4927106 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.58 34.0 4.26e-01 88.3% 97.8%
3963538 4261.1.1.1 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.57 34.0 4.09e-01 82.5% 90.0%
4968810 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.56 33.0 4.16e-01 86.4% 100.0%
3599719 304.102.1.0 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.54 37.0 3.07e-01 70.8% 52.3%
D3 medium residues 6-54_596-609
PDB
Domain cluster: rep: coat_protein__YP_009072432__Botryosphaeria_dothidea_victorivirus_1__1547580__D14-68
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05518.18 best Totivirus_coat 37.0 1.70e-09 95.2% 7.9%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.61 44.0 3.24e-01 77.8% 56.9%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 35.0 3.45e-01 73.0% 50.7%
2sliA03 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.61 36.0 3.14e-01 71.4% 37.0%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 43.0 3.63e-01 76.2% 85.6%
2ql8A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.57 40.0 3.09e-01 73.0% 39.3%
7s7rA01 2.60.40.2860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 40.0 3.20e-01 77.8% 70.0%
3rt0C00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 41.0 3.06e-01 81.0% 49.4%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 39.0 3.47e-01 74.6% 63.7%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 38.0 2.44e-01 73.0% 42.7%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.55 38.0 2.67e-01 73.0% 41.8%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.55 37.0 2.43e-01 71.4% 71.6%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.53 37.0 3.08e-01 77.8% 74.4%
5dvyA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 40.0 2.67e-01 88.9% 74.4%
8fwpB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 42.0 2.84e-01 88.9% 69.2%
4ffeX00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 37.0 2.91e-01 76.2% 67.3%
4fnvA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 39.0 2.56e-01 81.0% 87.9%
1xeuA02 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 35.0 3.28e-01 71.4% 79.5%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 38.0 2.79e-01 82.5% 73.6%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 37.0 2.74e-01 76.2% 93.0%
7t4dA01 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.51 39.0 2.53e-01 82.5% 81.4%
1jpyX00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.51 36.0 2.95e-01 74.6% 42.7%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 38.0 3.42e-01 85.7% 67.4%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4860339 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.75 43.0 3.74e-01 76.2% 40.4%
3706357 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.66 47.0 3.21e-01 76.2% 77.3%
4228205 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.64 45.0 3.43e-01 73.0% 42.9%
3734626 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.63 49.0 3.45e-01 87.3% 65.9%
3391461 3308.2.1.1 ↗ beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › 4_1_CTD 0.62 44.0 4.16e-01 74.6% 65.3%
3255418 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.62 45.0 2.79e-01 77.8% 72.2%
3440000 304.112.1.2 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.62 44.0 3.28e-01 79.4% 40.0%
5056431 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 42.0 3.45e-01 73.0% 68.8%
3761138 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.61 39.0 3.21e-01 71.4% 33.0%
4538250 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.61 42.0 3.31e-01 71.4% 80.7%
3603836 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.61 44.0 3.38e-01 76.2% 42.9%
3592605 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.61 45.0 3.27e-01 79.4% 62.3%
4466937 11.1.1.248 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG6 0.61 41.0 3.33e-01 71.4% 64.6%
3743269 5.1.4.561 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, CRT10 0.60 41.0 2.50e-01 71.4% 83.9%
5028249 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.60 42.0 3.55e-01 76.2% 60.5%
5056319 177.1.1.0 ↗ alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease 0.60 45.0 3.22e-01 81.0% 88.6%
3711567 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.59 43.0 2.79e-01 79.4% 84.4%
4009783 205.1.1.0 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.58 43.0 3.07e-01 79.4% 76.3%
2997715 11.13.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.57 45.0 3.00e-01 88.9% 27.6%
3410286 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.57 46.0 4.05e-01 88.9% 67.4%
3701672 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.57 45.0 3.38e-01 90.5% 89.4%
5040847 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 44.0 2.80e-01 82.5% 20.0%
3207857 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 42.0 2.64e-01 84.1% 39.0%
3720815 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.55 40.0 3.39e-01 77.8% 69.6%
1245468 391.1.1.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.55 36.0 4.05e-01 71.4% 100.0%
2772148 5090.1.1.5 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2 0.54 37.0 2.41e-01 73.0% 91.3%
3728856 171.1.1.9 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 0.54 41.0 2.94e-01 87.3% 64.4%
4946616 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.53 37.0 3.38e-01 74.6% 68.9%
3612051 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 45.0 3.13e-01 98.4% 57.9%
5071965 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.53 37.0 3.34e-01 76.2% 70.5%
3219195 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 39.0 3.38e-01 82.5% 89.5%
4777486 11.1.1.1386 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28858, PF28861 0.52 40.0 3.36e-01 82.5% 56.1%
5036100 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 3.07e-01 73.0% 76.2%
4156749 3234.1.1.2 ↗ a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N 0.52 41.0 2.80e-01 93.7% 52.3%
3474593 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.52 38.0 2.92e-01 81.0% 80.6%
5034346 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.51 36.0 2.41e-01 81.0% 39.7%
4013811 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.51 36.0 3.22e-01 74.6% 70.0%