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coat_protein
Euk-VirElderberry_carlavirus_B
coat_protein__YP_009224938__Elderberry_carlavirus_B__1569053
Identity
- Accession:
- YP_009224938 ↗
- Protein ID:
- coat_protein
- Kingdom:
- euk
Quality
74.7
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Tymovirales›
Betaflexiviridae›
Carlavirus›
Elderberry_carlavirus_B
TaxID: 1569053
Cluster
View cluster (87 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 101-178
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00286.26 best | Flexi_CP | 32.5 | 1.00e-07 | 87.2% | 45.6% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g7gA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.68 | 56.0 | 4.11e-01 | 88.5% | 79.7% |
| 4xhpA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.65 | 51.0 | 4.06e-01 | 87.2% | 56.2% |
| 2i5uA00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.63 | 45.0 | 4.55e-01 | 83.3% | 75.3% |
| 2yhsA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.63 | 43.0 | 4.05e-01 | 71.8% | 58.8% |
| 5adxJ01 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.62 | 46.0 | 4.40e-01 | 80.8% | 95.7% |
| 1tj7A03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.62 | 46.0 | 4.75e-01 | 84.6% | 87.3% |
| 4c2uA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 48.0 | 4.77e-01 | 87.2% | 84.0% |
| 1y4oA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.60 | 42.0 | 3.87e-01 | 74.4% | 60.6% |
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.56 | 36.0 | 4.03e-01 | 84.6% | 85.0% |
| 1avyB00 | 1.20.5.320 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 6-Phosphogluconate Dehydrogenase, domain 3 | 0.56 | 24.0 | 2.84e-01 | 80.8% | 55.6% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 38.0 | 3.44e-01 | 83.3% | 53.8% |
| 1rl0A02 | 4.10.470.10 | Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 | 0.55 | 37.0 | 3.86e-01 | 71.8% | 83.8% |
| 5iz3A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.54 | 40.0 | 3.14e-01 | 80.8% | 85.1% |
| 3raoB00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.51 | 40.0 | 2.66e-01 | 87.2% | 46.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2775588 | 3143.1.1.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Flexi_CP | 0.92 | 84.0 | 6.03e-01 | 100.0% | 38.2% |
| 4084 | 191.1.1.1 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 | 0.68 | 51.0 | 4.24e-01 | 79.5% | 72.7% |
| 5031689 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.57 | 39.0 | 4.00e-01 | 70.5% | 94.7% |
| 3583674 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.55 | 41.0 | 3.54e-01 | 92.3% | 50.4% |
| 1841610 | 4018.1.1.1 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase | 0.53 | 40.0 | 3.11e-01 | 82.1% | 84.7% |
| 3320244 | 53.1.1.4 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › XH | 0.52 | 41.0 | 3.76e-01 | 88.5% | 78.1% |
D2
medium
residues 179-272
Domain cluster:
rep: capsid_protein__YP_009552766__Turtle_grass_virus_X__2292642__D115-201
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00286.26 best | Flexi_CP | 106.8 | 1.20e-30 | 76.6% | 52.2% |