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coat_protein

Euk-Vir

Lake_Sarah-associated_circular_virus-18_Viruses.

coat_protein__YP_009237544__Lake_Sarah-associated_circular_virus-18_Viruses.__X

Identity

Accession:
YP_009237544 ↗
Protein ID:
coat_protein
Kingdom:
euk

Quality

70.8 mean pLDDT

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 62-225_244-316
PDB
Domain cluster: rep: putative_capsid_protein__YP_009163923__Gammarus_sp._amphipod_associated_circular_virus__1692250__D49-258
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6f2sH01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.81 60.0 6.35e-01 100.0% 83.7%
1stmA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.70 40.0 5.07e-01 100.0% 92.9%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.69 38.0 5.04e-01 99.6% 97.7%
7mjrA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.69 39.0 5.16e-01 99.2% 100.0%
1e57B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 43.0 4.84e-01 100.0% 81.4%
5hbaA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.68 38.0 5.03e-01 100.0% 98.5%
2y26A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 46.0 4.01e-01 100.0% 46.8%
4qpiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 45.0 4.67e-01 100.0% 72.8%
4bbwA01 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 42.0 4.95e-01 98.7% 90.7%
6mnjA01 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 42.0 5.01e-01 97.9% 94.2%
1pgsA01 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.65 38.0 4.89e-01 99.6% 99.3%
2gh8A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 44.0 4.72e-01 100.0% 78.7%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 47.0 4.49e-01 100.0% 64.2%
5ewnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 46.0 5.21e-01 100.0% 92.9%
2ztnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 46.0 5.13e-01 100.0% 91.1%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.64 38.0 4.87e-01 98.7% 100.0%
5j09A00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.64 44.0 5.12e-01 100.0% 97.1%
1tnrA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.64 39.0 4.86e-01 99.6% 97.9%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.64 41.0 4.92e-01 100.0% 96.2%
1ihmB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 44.0 4.61e-01 100.0% 75.9%
5aooC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 44.0 4.62e-01 100.0% 77.3%
4kq7A01 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.62 38.0 4.51e-01 100.0% 87.0%
1gff200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 42.0 4.76e-01 98.3% 89.8%
2y26A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 40.0 4.68e-01 99.6% 92.6%
2wz8A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 36.0 4.62e-01 98.7% 99.3%
2ws9100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 48.0 4.74e-01 100.0% 77.6%
1a8mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.60 37.0 4.53e-01 99.6% 94.7%
3gldA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 30.0 3.81e-01 75.1% 79.7%
1cd3F00 2.60.169.10 Mainly Beta › Sandwich › Bacteriophage G4 Capsid Proteins Gpf, Gpg, Gpj, subunit 1 › Microviridae F protein 0.57 54.0 4.39e-01 100.0% 95.1%
2yrbA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 33.0 4.33e-01 75.5% 100.0%
1lnsA04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 39.0 4.42e-01 99.6% 89.2%
1wcdJ01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 4.31e-01 100.0% 70.1%
8b38A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 4.95e-01 100.0% 93.4%
1pmhX00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 41.0 4.63e-01 99.2% 96.2%
2wuhA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 37.0 4.43e-01 99.2% 97.5%
3cjiA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 4.62e-01 100.0% 81.8%
4jdzA02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 35.0 4.06e-01 99.6% 88.5%
1djxA03 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 31.0 4.04e-01 76.4% 100.0%
3j26N01 2.60.120.1100 Mainly Beta › Sandwich › Jelly Rolls › 0.54 37.0 4.24e-01 100.0% 95.3%
3ks7A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.54 39.0 4.50e-01 99.2% 98.9%
4qc8A00 2.170.30.10 Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 0.53 50.0 3.88e-01 100.0% 85.7%
1x9pA01 2.60.120.550 Mainly Beta › Sandwich › Jelly Rolls › Penton protein; domain 1 0.52 33.0 3.91e-01 99.6% 90.2%
1g4mA01 2.60.40.840 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 4.28e-01 93.2% 100.0%
2qz5A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 31.0 3.81e-01 74.7% 93.4%
1gmiA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 29.0 3.77e-01 94.9% 98.5%
2qngA01 2.60.60.30 Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains 0.50 31.0 3.68e-01 99.2% 87.9%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2841541 10.2.1.11 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Gemini_coat 0.81 60.0 6.31e-01 100.0% 82.6%
3108819 10.2.1.11 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Gemini_coat 0.76 62.0 6.47e-01 100.0% 92.1%
3215810 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.72 37.0 4.81e-01 98.7% 85.2%
3709396 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.71 42.0 4.78e-01 95.8% 75.6%
3748555 10.32.1.216 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MAM 0.70 35.0 5.01e-01 91.6% 100.0%
3477919 10.32.1.225 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF31127 0.70 44.0 5.50e-01 98.7% 100.0%
3614575 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.69 39.0 4.92e-01 99.6% 89.7%
3605104 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.68 38.0 4.90e-01 98.7% 92.1%
1214 10.2.1.38 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat_N 0.68 46.0 5.32e-01 100.0% 92.0%
1868431 10.3.1.2 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.68 38.0 5.03e-01 100.0% 98.5%
1400716 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.67 45.0 4.67e-01 100.0% 72.8%
3700401 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 38.0 4.25e-01 98.7% 71.4%
3902712 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.66 40.0 4.35e-01 100.0% 69.3%
3579486 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 38.0 4.94e-01 99.6% 98.5%
1696117 10.2.1.13 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat 0.66 44.0 4.90e-01 100.0% 84.8%
4011054 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 36.0 4.85e-01 97.0% 100.0%
3596607 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 42.0 5.17e-01 99.2% 98.1%
3898740 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.66 37.0 4.82e-01 99.6% 94.9%
4542786 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.65 43.0 4.56e-01 100.0% 73.8%
3364460 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.65 39.0 4.99e-01 98.7% 98.6%
4949004 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 43.0 5.23e-01 97.9% 100.0%
3611563 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 37.0 4.19e-01 98.7% 72.8%
3698953 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.64 35.0 4.45e-01 100.0% 88.6%
4030056 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 39.0 4.75e-01 99.2% 91.6%
2704186 10.32.1.30 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › NPCBM 0.64 40.0 5.02e-01 99.2% 100.0%
3898208 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.64 40.0 4.88e-01 98.7% 95.5%
3607218 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 37.0 4.15e-01 98.7% 72.4%
3802001 207.1.1.174 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_3 0.63 33.0 2.53e-01 99.6% 22.3%
3876166 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.63 37.0 4.75e-01 97.5% 98.6%
1841617 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.62 47.0 4.59e-01 100.0% 71.4%
4278178 10.32.1.192 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.62 37.0 4.29e-01 98.7% 80.6%
143450 10.2.1.37 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat_C 0.62 40.0 4.68e-01 99.6% 92.6%
3817425 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 36.0 3.99e-01 92.4% 69.2%
3864012 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.62 41.0 4.73e-01 100.0% 90.8%
3906314 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.61 39.0 4.73e-01 100.0% 96.7%
4249886 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.61 40.0 4.19e-01 99.6% 70.0%
5009883 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 37.0 4.39e-01 99.2% 87.5%
5045800 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 36.0 4.50e-01 94.5% 94.5%
4244478 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.61 39.0 3.50e-01 99.2% 45.7%
3620107 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.60 36.0 4.57e-01 98.3% 98.6%
3307728 10.32.1.192 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.59 35.0 4.17e-01 99.2% 84.4%
3206484 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 34.0 4.39e-01 88.2% 100.0%
3614904 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 42.0 4.82e-01 98.3% 99.4%
5033292 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 40.0 4.43e-01 97.5% 85.3%
3598842 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.58 37.0 4.56e-01 94.9% 100.0%
5020143 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 44.0 4.94e-01 98.3% 100.0%
4426314 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 35.0 4.42e-01 97.5% 98.6%
3898970 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.57 42.0 4.22e-01 100.0% 74.2%
5064146 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 39.0 4.56e-01 94.1% 98.2%
3735749 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 38.0 4.36e-01 97.0% 91.7%
3616878 11.2.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2-C2_1 0.55 33.0 4.11e-01 76.4% 95.2%
3611488 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.54 41.0 4.42e-01 98.7% 91.0%
3970201 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 38.0 4.32e-01 98.7% 93.9%
3473996 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.53 49.0 4.65e-01 100.0% 90.4%
3457985 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.53 43.0 4.58e-01 100.0% 96.6%
3238302 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 37.0 4.23e-01 76.8% 96.0%
3233279 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 32.0 3.97e-01 74.7% 100.0%
4022751 10.32.1.31 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.52 45.0 4.61e-01 99.6% 96.4%
4319705 10.32.1.196 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › WLS_GOLD 0.52 41.0 4.46e-01 99.6% 99.5%
3478009 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 31.0 3.82e-01 75.5% 94.0%
5033996 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 47.0 4.69e-01 100.0% 98.8%
4496880 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.50 35.0 4.00e-01 99.6% 92.4%
3593942 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.50 31.0 3.80e-01 89.0% 96.7%