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coat_protein

Euk-Vir

Penicillium_digitatum_virus_1

coat_protein__YP_009249474__Penicillium_digitatum_virus_1__1833938

Identity

Accession:
YP_009249474 ↗
Protein ID:
coat_protein
Kingdom:
euk

Quality

72.0 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Pseudototiviridae› Victorivirus› Penicillium_digitatum_virus_1

TaxID: 1833938

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 80-238_277-297
PDB
Domain cluster: rep: coat_protein__YP_009212847__Penicillium_aurantiogriseum_totivirus_1__1755467__D82-115_136-208_280-306
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05518.18 best Totivirus_coat 217.6 3.70e-64 88.9% 24.8%
D2 medium residues 18-59_309-334_426-465_591-605
PDB
Domain cluster: rep: coat_protein__YP_009004155__Ustilaginoidea_virens_RNA_virus_3__1460374__D17-72_452-464_584-610
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF05518.18 best Totivirus_coat 31.6 7.30e-08 40.6% 6.6%
PF05518.18 Totivirus_coat 31.9 6.10e-08 21.9% 4.3%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3waiA02 2.60.40.3390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 31.0 3.49e-01 97.6% 66.7%
2dbjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 29.0 3.14e-01 99.2% 55.0%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 29.0 3.11e-01 91.1% 53.7%
7y8sB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 29.0 3.31e-01 100.0% 66.7%
6x3aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 33.0 3.55e-01 99.2% 70.2%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.53 32.0 3.38e-01 100.0% 66.7%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 28.0 3.44e-01 86.2% 81.6%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.53 26.0 3.38e-01 94.3% 90.0%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 4.03e-01 86.2% 93.7%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.52 28.0 2.78e-01 83.7% 48.9%
2eddA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 28.0 2.98e-01 100.0% 55.4%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 26.0 3.20e-01 85.4% 82.1%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 30.0 2.72e-01 100.0% 42.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3218957 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.62 34.0 3.53e-01 98.4% 56.5%
3979798 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.62 37.0 3.91e-01 88.6% 66.4%
5081134 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.61 26.0 3.75e-01 82.9% 85.0%
3396683 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 28.0 3.37e-01 83.7% 67.1%
3890320 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 30.0 3.35e-01 100.0% 62.1%
4967222 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.57 29.0 3.99e-01 84.6% 100.0%
4939739 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.57 29.0 3.94e-01 83.7% 100.0%
3994984 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.56 29.0 4.03e-01 84.6% 98.5%
5065436 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.55 29.0 3.83e-01 86.2% 96.9%
3227513 3115.1.1.3 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › NRF 0.55 32.0 3.49e-01 94.3% 67.6%
3965010 3115.4.1.1 ↗ a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.54 28.0 3.24e-01 94.3% 66.7%
3204836 2492.1.1.32 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › OTT_1508_deam 0.54 33.0 3.07e-01 95.9% 47.7%
3490255 11.1.4.114 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7062 0.53 29.0 3.19e-01 100.0% 62.0%
4951473 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.53 28.0 3.64e-01 85.4% 96.8%
223776 3115.4.1.1 ↗ a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.52 27.0 3.34e-01 87.8% 83.1%
3899239 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.52 34.0 3.95e-01 92.7% 93.3%
5032784 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 28.0 3.15e-01 98.4% 66.3%
4963504 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 29.0 3.33e-01 87.8% 77.8%
D3 medium residues 60-79_239-276_298-308
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05518.18 best Totivirus_coat 67.9 7.60e-19 75.4% 6.5%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3594174 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.50 34.0 2.68e-01 71.0% 53.3%
D4 medium residues 466-590_627-652
PDB
Domain cluster: rep: coat_protein__YP_009182166__Ustilaginoidea_virens_RNA_virus_5__1756615__D455-595_610-622
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05518.18 best Totivirus_coat 120.8 7.40e-35 100.0% 20.3%