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coat_protein

Euk-Vir

Sclerotinia_nivalis_victorivirus_1

coat_protein__YP_009259367__Sclerotinia_nivalis_victorivirus_1__1859161

Identity

Accession:
YP_009259367 ↗
Protein ID:
coat_protein
Kingdom:
euk

Quality

74.5 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Pseudototiviridae› Victorivirus› Sclerotinia_nivalis_victorivirus_1

TaxID: 1859161

Cluster

View cluster (28 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 455-586_605-627
PDB
Domain cluster: rep: coat_protein__YP_009182166__Ustilaginoidea_virens_RNA_virus_5__1756615__D455-595_610-622
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05518.18 best Totivirus_coat 191.3 3.30e-56 87.1% 21.1%
D2 medium residues 5-68
PDB
Domain cluster: rep: coat_protein__YP_009072432__Botryosphaeria_dothidea_victorivirus_1__1547580__D14-68
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05518.18 best Totivirus_coat 62.8 2.70e-17 92.2% 9.3%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 45.0 4.03e-01 85.9% 60.0%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.58 34.0 2.68e-01 70.3% 23.8%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.55e-01 78.1% 84.6%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.56 40.0 3.34e-01 78.1% 53.6%
2wmpB00 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.56 43.0 3.55e-01 84.4% 81.3%
1jpyX00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.56 36.0 2.95e-01 70.3% 35.9%
7t4dA01 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.55 38.0 2.56e-01 73.4% 70.6%
2bjoA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.55 38.0 3.36e-01 71.9% 58.5%
7w3rB01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 35.0 2.30e-01 79.7% 13.5%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.54 42.0 2.85e-01 89.1% 77.7%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 39.0 2.48e-01 78.1% 18.2%
1ya5T01 2.20.160.10 Mainly Beta › Single Sheet › titin filament fold › titin domain like 0.53 38.0 3.56e-01 78.1% 78.6%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 38.0 2.93e-01 76.6% 47.1%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.53 38.0 2.97e-01 81.2% 72.2%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.52 43.0 3.56e-01 95.3% 70.7%
6ap4B02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 40.0 3.23e-01 89.1% 86.5%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 3.07e-01 79.7% 43.1%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.51 37.0 3.11e-01 82.8% 74.4%
6kghA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 36.0 2.85e-01 76.6% 59.1%
4ffeX00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 36.0 2.85e-01 76.6% 42.7%
2znhA03 6.20.40.10 Special › Other non-globular › Porin MspA ribbon fold › 0.51 35.0 3.88e-01 75.0% 100.0%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.51 35.0 2.91e-01 71.9% 54.9%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.01e-01 82.8% 63.7%
3rpjA00 3.30.310.230 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sigma factor-binding protein Crl monomer 0.50 36.0 2.89e-01 79.7% 38.1%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 37.0 2.72e-01 82.8% 76.6%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3391461 3308.2.1.1 ↗ beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › 4_1_CTD 0.73 44.0 4.21e-01 75.0% 52.0%
4777486 11.1.1.1386 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28858, PF28861 0.64 41.0 3.41e-01 81.2% 36.8%
3706357 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.63 48.0 3.34e-01 84.4% 82.2%
3397147 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.63 44.0 3.42e-01 75.0% 46.2%
3634542 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.62 44.0 3.19e-01 73.4% 31.5%
4997962 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.62 43.0 2.84e-01 71.9% 96.2%
3479176 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.61 42.0 3.96e-01 85.9% 57.5%
3592605 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.61 46.0 3.42e-01 82.8% 93.1%
5040847 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 42.0 2.75e-01 71.9% 17.3%
4466937 11.1.1.248 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG6 0.61 42.0 3.42e-01 73.4% 46.2%
3440000 304.112.1.2 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.61 42.0 3.09e-01 73.4% 30.8%
3498230 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.61 42.0 3.93e-01 85.9% 57.5%
3472421 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.60 43.0 3.53e-01 84.4% 38.5%
3486945 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.60 43.0 3.52e-01 84.4% 38.5%
4013325 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.60 44.0 3.65e-01 81.2% 72.8%
3654114 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.59 46.0 3.22e-01 84.4% 34.3%
3490957 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 35.0 3.34e-01 73.4% 48.0%
3743269 5.1.4.561 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, CRT10 0.58 46.0 2.81e-01 85.9% 93.3%
5028249 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.58 41.0 3.48e-01 76.6% 61.4%
4351239 4967.1.1.6 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.56 39.0 3.23e-01 76.6% 37.7%
3743199 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 3.16e-01 73.4% 53.6%
3496677 3315.1.1.1 ↗ a+b complex topology › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Glyco_transf_41 0.55 41.0 3.43e-01 81.2% 67.8%
3503098 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.55 37.0 3.32e-01 70.3% 47.4%
5056319 177.1.1.0 ↗ alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease 0.55 45.0 3.38e-01 96.9% 74.1%
3761138 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 41.0 3.50e-01 84.4% 61.7%
4004219 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.54 43.0 3.48e-01 87.5% 46.4%
3838697 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.54 45.0 3.32e-01 95.3% 76.2%
4856794 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.54 39.0 3.75e-01 84.4% 64.9%
4989866 205.1.1.17 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 0.53 38.0 2.75e-01 78.1% 48.2%
4009783 205.1.1.0 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.53 39.0 2.86e-01 79.7% 41.1%
5054294 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 41.0 3.61e-01 87.5% 71.0%
5034346 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.52 40.0 2.67e-01 92.2% 53.4%
4126255 4967.1.1.25 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N 0.52 37.0 2.57e-01 79.7% 19.3%
4951143 295.1.1.53 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3467 0.52 31.0 3.33e-01 70.3% 69.1%
3709357 2003.1.1.59 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 0.51 36.0 2.60e-01 76.6% 64.2%
4486052 304.48.1.39 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › MatK_N 0.51 34.0 2.21e-01 76.6% 12.9%
3418267 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.51 36.0 3.07e-01 85.9% 41.7%
3612632 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.51 36.0 2.18e-01 78.1% 35.2%
3675789 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.81e-01 96.9% 75.7%
3735314 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.51 36.0 2.38e-01 76.6% 50.2%
D3 medium residues 69-133_212-276
PDB
Domain cluster: rep: coat_protein__YP_009212847__Penicillium_aurantiogriseum_totivirus_1__1755467__D82-115_136-208_280-306
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF05518.18 best Totivirus_coat 122.9 1.70e-35 53.8% 10.7%
PF05518.18 Totivirus_coat 69.1 3.40e-19 52.3% 10.4%
D4 medium residues 134-211_277-306
PDB
Domain cluster: rep: coat_protein__YP_009212847__Penicillium_aurantiogriseum_totivirus_1__1755467__D82-115_136-208_280-306
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05518.18 best Totivirus_coat 104.6 6.00e-30 73.2% 12.2%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w78A01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 41.0 3.07e-01 85.2% 75.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995730 2004.1.1.21 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA 0.55 38.0 2.92e-01 72.2% 75.6%
4013476 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 38.0 3.97e-01 76.9% 97.0%
3985831 2004.1.1.719 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, Helicase_C, SecA_DEAD, RecG_dom3_C 0.51 41.0 2.63e-01 86.1% 66.5%