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coat_protein

Euk-Vir

Maize-associated_totivirus_2

coat_protein__YP_009259485__Maize-associated_totivirus_2__1874267

Identity

Accession:: YP_009259485 ↗
Protein ID:: coat_protein
Kingdom:: euk

Quality

70.8 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Orthototiviridae› Maize-associated_totivirus_2

TaxID: 1874267

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-67_139-160_676-699

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF09220.17 best	LA-virus_coat	51.2	9.10e-14	70.8%	15.5%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1m1cA00	3.90.1840.10	Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein	0.74	66.0	4.04e-01	96.5%	93.9%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7654	4065.1.1.1 ↗	a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › LA-virus_coat	0.74	66.0	4.04e-01	96.5%	93.9%

D2 medium residues 269-312_345-371

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF09220.17 best	LA-virus_coat	64.6	7.70e-18	63.4%	10.1%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1oahA02	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.56	41.0	3.31e-01	78.9%	64.1%
1wizA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.53	40.0	3.91e-01	83.1%	100.0%
1ciyA01	1.20.190.10	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain	0.50	42.0	3.02e-01	94.4%	68.3%
3hgkE00	1.20.1280.110	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.50	38.0	3.71e-01	80.3%	97.4%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5041226	604.16.1.0 ↗	alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain	0.62	32.0	3.34e-01	83.1%	53.8%
4005523	3860.1.1.167 ↗	alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › MscS_porin	0.56	40.0	3.10e-01	76.1%	90.0%
3846034	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.54	39.0	3.21e-01	77.5%	74.1%
3787080	109.4.1.17 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin	0.52	45.0	3.97e-01	95.8%	70.5%
3519300	1147.1.1.1 ↗	alpha bundles › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › Occludin_ELL	0.52	37.0	3.11e-01	74.6%	86.7%
3246839	109.58.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain	0.52	36.0	3.35e-01	87.3%	56.7%
3719828	109.4.1.1127 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_Cnot1	0.52	46.0	3.30e-01	100.0%	64.3%
222846	150.5.1.1 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100	0.51	33.0	3.04e-01	87.3%	49.5%
4011264	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	45.0	3.62e-01	100.0%	83.6%

D3 medium residues 372-434

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF09220.17 best	LA-virus_coat	57.2	1.40e-15	100.0%	14.2%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wa5A01	1.10.418.10	Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain	0.51	39.0	3.49e-01	90.5%	87.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4325854	242.4.1.2 ↗	a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central	0.57	41.0	3.50e-01	79.4%	82.7%
3932974	193.1.1.1 ↗	alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH	0.52	38.0	3.27e-01	85.7%	72.8%

D4 medium residues 435-546

PDB

D5 medium residues 582-675

PDB