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coat_protein
Euk-VirArracacha_virus_V
coat_protein__YP_009352885__Arracacha_virus_V__1972716
Identity
- Accession:
- YP_009352885 ↗
- Protein ID:
- coat_protein
- Kingdom:
- euk
Quality
85.2
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Tymovirales›
Betaflexiviridae›
Vitivirus›
Arracacha_virus_V
TaxID: 1972716
Cluster
View cluster (18 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-108
Domain cluster:
rep: coat_protein__YP_002117778__Grapevine_virus_E__516956__D1-127
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05892.18 best | Tricho_coat | 50.4 | 3.10e-13 | 96.3% | 45.5% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.50 | 28.0 | 2.89e-01 | 88.9% | 55.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3772242 | 101.1.8.12 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3504 | 0.57 | 46.0 | 3.93e-01 | 100.0% | 52.4% |
| 4889143 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.50 | 41.0 | 3.21e-01 | 88.0% | 69.3% |
D2
high
residues 126-189
Domain cluster:
rep: capsid_protein__YP_008997792__Apricot_vein_clearing_associated_virus__1343920__D148-220
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05892.18 best | Tricho_coat | 83.8 | 1.80e-23 | 100.0% | 30.7% |