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coat_protein

Euk-Vir

Picorna-like_virus_AWando15

coat_protein__YP_009362297__Picorna-like_virus_AWando15__1983535

Identity

Accession:
YP_009362297 ↗
Protein ID:
coat_protein
Kingdom:
euk

Quality

70.2 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picorna-like_virus_AWando15

TaxID: 1983535

Cluster

View cluster (173 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 97-284
PDB
Domain cluster: rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF22663.3 best Rhv_5 29.4 9.70e-07 97.9% 81.5%
PF00073.27 Rhv 32.9 7.10e-08 75.0% 67.2%
D2 medium residues 407-418_450-479_580-649
PDB
Domain cluster: representative
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4980535 101.1.2.914 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.50 31.0 3.30e-01 91.1% 70.5%
4029762 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.50 27.0 3.16e-01 98.2% 77.1%
D3 medium residues 419-449_480-579
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009423855__Tioga_picorna-like_virus_1__2029771__D341-389_405-441_461-513_534-554
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3napC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.83 80.0 6.03e-01 100.0% 62.0%
5mqcC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.81 78.0 6.00e-01 100.0% 60.8%
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.81 77.0 5.81e-01 100.0% 56.7%
4qpiC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.78 74.0 5.85e-01 100.0% 62.2%
5aooC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 69.0 5.71e-01 100.0% 64.1%
5j98B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 69.0 5.38e-01 100.0% 63.5%
2ws9300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 69.0 5.64e-01 100.0% 60.6%
3napB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 69.0 5.44e-01 100.0% 55.9%
5mqcB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 69.0 5.54e-01 100.0% 60.2%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.72 68.0 5.32e-01 100.0% 54.9%
2ztnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.72 67.0 5.83e-01 100.0% 78.9%
3vbhC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 67.0 5.37e-01 100.0% 64.0%
5yl1A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 67.0 5.90e-01 100.0% 83.4%
5k0uB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 66.0 5.32e-01 100.0% 62.6%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 66.0 5.35e-01 100.0% 64.3%
5aca300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 66.0 5.40e-01 100.0% 64.9%
1ihmB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 66.0 5.43e-01 100.0% 59.5%
1c8nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 65.0 5.40e-01 100.0% 70.8%
1fmd200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 64.0 5.26e-01 100.0% 58.3%
7dodB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 64.0 5.57e-01 100.0% 66.8%
6eiwA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 63.0 5.45e-01 97.7% 85.4%
3jb4C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 64.0 5.13e-01 100.0% 56.4%
4nwvA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 63.0 5.53e-01 99.2% 75.0%
1f2nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 61.0 5.13e-01 98.5% 70.8%
1ng0C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 61.0 5.12e-01 100.0% 72.5%
3jb8A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 60.0 5.34e-01 100.0% 81.6%
6aj3B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 61.0 5.60e-01 100.0% 87.3%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 59.0 5.49e-01 100.0% 82.4%
6mrmC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 57.0 5.25e-01 100.0% 82.2%
3napA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 56.0 4.37e-01 97.7% 58.0%
6sk6A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 55.0 4.27e-01 100.0% 57.9%
1cov100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 53.0 4.19e-01 100.0% 57.2%
4bcuA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 51.0 4.51e-01 98.5% 79.8%
1a6cA02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 4.47e-01 99.2% 80.0%
1egjA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.91e-01 92.4% 87.1%
3og6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 33.0 3.68e-01 92.4% 85.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2982737 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.87 84.0 6.31e-01 100.0% 61.2%
140024 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.83 80.0 6.03e-01 100.0% 62.0%
2099164 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.81 77.0 5.81e-01 100.0% 56.7%
2044958 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.77 73.0 5.68e-01 100.0% 60.2%
2589532 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.71 66.0 5.73e-01 100.0% 77.8%
2441244 10.2.1.7 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.70 65.0 5.42e-01 100.0% 67.7%
2006903 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.63 56.0 4.33e-01 96.9% 54.6%
2440134 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.60 53.0 4.66e-01 98.5% 66.0%
5083851 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 41.0 4.34e-01 100.0% 87.7%
4965898 11.1.1.1432 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26259 0.53 36.0 4.01e-01 96.9% 85.7%
3236810 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 49.0 4.45e-01 100.0% 81.8%
3929726 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 30.0 3.21e-01 73.3% 63.5%
5040531 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 41.0 4.26e-01 100.0% 88.8%
D4 medium residues 650-699_729-744_792-813_829-841
PDB
Domain cluster: representative
D5 medium residues 700-728_745-791_814-828
PDB
Domain cluster: rep: structural_polyprotein__NP_620565__Black_queen_cell_virus__92395__D684-802
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8b38A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.82 76.0 5.57e-01 100.0% 60.2%
1b35A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.76 69.0 4.93e-01 100.0% 54.6%
6jhsA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.75 69.0 4.90e-01 100.0% 45.4%
3napC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 67.0 4.67e-01 100.0% 50.4%
2ws9100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 66.0 4.78e-01 100.0% 56.5%
6eiwA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 66.0 5.08e-01 100.0% 63.5%
2ws9300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 65.0 4.80e-01 100.0% 50.4%
4rs5A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 64.0 4.76e-01 100.0% 58.8%
5aca300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 63.0 4.72e-01 100.0% 50.5%
5mqcC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 64.0 4.55e-01 100.0% 45.4%
3napA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 64.0 4.50e-01 100.0% 42.4%
3napB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 62.0 4.52e-01 100.0% 48.2%
2gh8A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 62.0 4.79e-01 100.0% 54.5%
5k0uB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 63.0 4.58e-01 100.0% 46.4%
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 62.0 4.35e-01 100.0% 45.0%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 62.0 4.56e-01 100.0% 48.3%
3vbhC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 62.0 4.49e-01 100.0% 46.7%
5aooC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 61.0 4.59e-01 100.0% 51.8%
7chkB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 59.0 5.11e-01 100.0% 64.4%
3cjiA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 60.0 4.31e-01 100.0% 49.6%
4qpiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 59.0 4.50e-01 100.0% 49.8%
3jciA00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.66 58.0 4.63e-01 100.0% 71.1%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 58.0 4.25e-01 100.0% 46.7%
1tme200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 58.0 4.21e-01 100.0% 58.4%
6aj3B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 56.0 4.63e-01 100.0% 78.9%
5j09A00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.62 54.0 4.49e-01 100.0% 70.8%
1ng0C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 53.0 4.09e-01 100.0% 61.9%
3jb8A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 52.0 4.19e-01 100.0% 63.2%
2y26A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 53.0 4.40e-01 100.0% 60.5%
6f2sH01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 52.0 3.99e-01 100.0% 79.5%
4llfD01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 51.0 4.18e-01 100.0% 60.7%
2tbvA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 50.0 3.62e-01 100.0% 38.1%
1fmd100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 50.0 3.93e-01 100.0% 47.1%
3c0nB03 2.170.15.10 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 0.53 46.0 3.73e-01 100.0% 67.4%
1dzlA00 2.60.175.20 Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus 0.51 43.0 2.87e-01 100.0% 65.1%
3gldA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 3.63e-01 92.3% 96.5%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4835076 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.82 76.0 5.85e-01 100.0% 70.8%
1841618 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.77 73.0 5.12e-01 100.0% 50.0%
2048473 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.76 70.0 4.99e-01 100.0% 51.2%
1405131 10.2.1.51 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › HAV_VP 0.75 68.0 4.84e-01 100.0% 44.9%
140024 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.73 67.0 4.67e-01 100.0% 50.4%
2579094 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.71 65.0 4.63e-01 100.0% 48.3%
2982737 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.71 65.0 4.55e-01 100.0% 48.6%
139106 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.71 65.0 4.81e-01 100.0% 50.4%
2389608 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.71 66.0 4.73e-01 100.0% 50.2%
2439648 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.70 65.0 4.52e-01 100.0% 48.4%
1945727 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.70 64.0 4.57e-01 100.0% 44.3%
1949031 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.70 64.0 4.55e-01 100.0% 45.4%
140026 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.69 64.0 4.50e-01 100.0% 42.4%
2982483 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.69 63.0 4.61e-01 100.0% 46.4%
1693517 10.2.1.13 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat 0.69 62.0 4.80e-01 100.0% 55.0%
2099164 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.68 62.0 4.35e-01 100.0% 45.0%
31099 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.68 62.0 4.56e-01 100.0% 48.3%
4900996 10.2.1.88 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv, Calici_coat 0.66 60.0 4.77e-01 100.0% 58.7%
1866052 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.66 61.0 4.59e-01 100.0% 48.1%
2440134 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.66 61.0 4.74e-01 100.0% 53.2%
141629 10.2.1.69 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.64 45.0 3.92e-01 81.3% 48.2%
1687950 10.2.1.69 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.64 45.0 3.93e-01 81.3% 48.6%
2006903 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.63 59.0 4.07e-01 100.0% 37.1%
4880563 10.2.1.9 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat 0.56 41.0 3.30e-01 78.0% 74.5%
3661896 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 46.0 4.00e-01 100.0% 94.5%
4028909 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 43.0 3.94e-01 94.5% 76.8%
3632264 11.1.1.972 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29592 0.50 39.0 3.34e-01 83.5% 87.8%