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coat_protein
Euk-VirEuonymus_yellow_vein_virus
coat_protein__YP_009389423__Euonymus_yellow_vein_virus__2013968
Identity
- Accession:
- YP_009389423 ↗
- Protein ID:
- coat_protein
- Kingdom:
- euk
Quality
74.8
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Tymovirales›
Alphaflexiviridae›
Potexvirus›
Euonymus_yellow_vein_virus
TaxID: 2013968
Cluster
View cluster (87 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-58
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qkaE02 | 1.10.287.2460 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 47.0 | 4.98e-01 | 70.4% | 90.7% |
| 3u61D03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.69 | 49.0 | 4.16e-01 | 75.9% | 51.6% |
| 4eqyA02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.69 | 59.0 | 5.48e-01 | 98.1% | 80.0% |
| 2da4A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 52.0 | 4.93e-01 | 87.0% | 69.7% |
| 3sp1A02 | 1.20.120.1910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cysteine-tRNA ligase, C-terminal anti-codon recognition domain | 0.67 | 56.0 | 4.19e-01 | 100.0% | 38.4% |
| 1f7cA00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.65 | 55.0 | 3.91e-01 | 100.0% | 57.1% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.59 | 48.0 | 4.34e-01 | 90.7% | 70.7% |
| 3aawC01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.56 | 42.0 | 2.86e-01 | 87.0% | 83.3% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 39.0 | 3.98e-01 | 83.3% | 80.0% |
| 4nqwA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 45.0 | 4.27e-01 | 98.1% | 85.9% |
| 3ctwB00 | 1.10.8.930 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465 | 0.50 | 42.0 | 3.38e-01 | 100.0% | 57.5% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3245000 | 4338.1.1.0 ↗ | alpha complex topology › PSPTO4464 N-terminal domain-like › PSPTO4464 N-terminal domain-like › PSPTO4464 N-terminal domain-like | 0.78 | 68.0 | 5.83e-01 | 98.1% | 69.4% |
| 3777242 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.72 | 62.0 | 4.72e-01 | 100.0% | 42.5% |
| 3902188 | 185.1.3.1 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › GDNF receptor › GDNF | 0.71 | 60.0 | 5.40e-01 | 100.0% | 88.7% |
| 4460488 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.69 | 58.0 | 5.82e-01 | 96.3% | 92.7% |
| 3938224 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.67 | 57.0 | 5.25e-01 | 100.0% | 73.3% |
| 4630325 | 509.1.1.10 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › HHD_RTEL1 | 0.66 | 56.0 | 5.11e-01 | 100.0% | 70.7% |
| 3533358 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.66 | 48.0 | 4.01e-01 | 77.8% | 97.9% |
| 3451532 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 50.0 | 4.88e-01 | 94.4% | 78.3% |
| 4939992 | 298.2.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE | 0.62 | 46.0 | 3.38e-01 | 83.3% | 42.4% |
| 4029858 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.61 | 44.0 | 3.59e-01 | 79.6% | 77.3% |
| 5052144 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 48.0 | 4.82e-01 | 98.1% | 96.4% |
| 3277195 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.57 | 42.0 | 4.24e-01 | 85.2% | 83.6% |
D2
high
residues 125-275
Domain cluster:
rep: coat_protein__YP_009091818__Yam_virus_X__1503864__D37-177
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00286.26 best | Flexi_CP | 138.7 | 1.70e-40 | 86.8% | 92.0% |