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coat_protein

Euk-Vir

Eimeria_stiedai_RNA_virus_1

coat_protein__YP_009551683__Eimeria_stiedai_RNA_virus_1__1898175

Identity

Accession:: YP_009551683 ↗
Protein ID:: coat_protein
Kingdom:: euk

Quality

68.6 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Orthototiviridae› Eimeria_stiedai_RNA_virus_1

TaxID: 1898175

Cluster

View cluster (28 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-66_622-662

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ql8A00	3.30.300.20	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain	0.53	33.0	2.83e-01	70.0%	40.0%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3982740	5086.1.1.190 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP	0.65	32.0	2.47e-01	92.2%	21.5%
3576642	11.1.1.41 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C	0.60	43.0	3.53e-01	75.6%	80.0%
3797443	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.59	43.0	3.65e-01	76.7%	69.7%
5040847	5.1.5.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed	0.56	37.0	2.51e-01	81.1%	20.3%
3236876	1.1.5.49 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316	0.56	41.0	2.96e-01	78.9%	87.7%
3739782	9.2.1.3 ↗	beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C	0.55	40.0	3.38e-01	77.8%	49.0%
5029082	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.54	37.0	3.06e-01	70.0%	99.4%
3508694	11.1.1.9 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N	0.52	38.0	2.97e-01	76.7%	44.5%
3922317	11.2.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain	0.51	35.0	2.81e-01	70.0%	56.8%
3948877	205.1.1.53 ↗	a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_6, Fer4_7, Fer4_11	0.51	36.0	2.83e-01	74.4%	75.5%
3391461	3308.2.1.1 ↗	beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › 4_1_CTD	0.51	35.0	3.85e-01	76.7%	86.7%
3975637	205.1.1.50 ↗	a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4, Fer4_7, Fer4_11	0.50	36.0	2.82e-01	74.4%	76.0%

D2 medium residues 95-115_215-329

PDB

Domain cluster: rep: putative_coat_protein__YP_007761588__Ustilaginoidea_virens_RNA_virus_1__1312445__D92-123_255-319_342-353

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	164.9	3.30e-48	91.2%	18.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5050406	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.54	30.0	3.64e-01	79.4%	85.9%

D3 medium residues 116-214

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	86.3	2.00e-24	100.0%	15.1%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1b4eA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.70	51.0	3.57e-01	76.8%	98.1%
3obwA03	3.30.1330.30	Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12	0.59	35.0	3.55e-01	92.9%	57.8%
2qi2A03	3.30.1330.30	Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12	0.58	33.0	3.46e-01	92.9%	59.6%
3wxmB03	3.30.1330.30	Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12	0.55	35.0	3.48e-01	91.9%	60.7%
1ba3A02	3.40.50.980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.54	39.0	3.23e-01	75.8%	50.8%
2gmhA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.54	39.0	2.94e-01	76.8%	74.7%
3nohA00	3.40.190.210	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 ›	0.53	35.0	3.29e-01	90.9%	54.9%
1vbkA02	3.30.2300.10	Alpha Beta › 2-Layer Sandwich › THUMP fold › THUMP superfamily	0.52	30.0	3.28e-01	85.9%	68.3%
1f75A00	3.40.1180.10	Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like	0.51	34.0	2.70e-01	87.9%	31.3%
3dmnA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.50	38.0	3.35e-01	82.8%	98.8%
1qs0A00	3.40.50.970	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains	0.50	41.0	2.73e-01	88.9%	67.1%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5026551	301.1.1.2 ↗	a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3	0.57	35.0	3.53e-01	92.9%	61.0%
3678543	2485.1.1.1 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin	0.54	38.0	3.56e-01	71.7%	76.0%
3278541	7574.1.1.12 ↗	a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › PDH_E1_M	0.53	40.0	3.07e-01	79.8%	93.9%
5043615	4143.1.1.1 ↗	a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP	0.53	29.0	3.16e-01	81.8%	63.5%
3839112	2004.1.1.364 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C	0.52	40.0	2.65e-01	85.9%	56.7%

D4 medium residues 330-454

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	61.2	7.70e-17	100.0%	16.1%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3gzfD00	1.10.150.420	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus	0.72	29.0	3.42e-01	74.4%	51.6%
2jexA01	1.10.287.30	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1	0.58	32.0	3.66e-01	75.2%	70.8%
6xxvC00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.57	43.0	4.53e-01	89.6%	88.3%
4l8iB00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.56	42.0	4.42e-01	89.6%	88.4%
4kb2A01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.56	41.0	4.41e-01	89.6%	89.9%
2q0oC00	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.56	33.0	3.81e-01	98.4%	83.7%
3i5pA02	1.25.40.440	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain	0.55	25.0	3.11e-01	77.6%	70.0%
4oydB00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.54	42.0	4.30e-01	89.6%	88.0%
2w2dD01	1.20.1120.10	Mainly Alpha › Up-down Bundle › "Clostridium botulinum neurotoxin B, ""coiled-coil"" domain" › "Clostridium botulinum neurotoxin b, ""coiled-coil"" domain"	0.52	44.0	3.08e-01	92.8%	88.7%
1wgwA00	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.52	33.0	3.69e-01	100.0%	82.8%
2v0xA01	1.10.287.3160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.51	38.0	3.43e-01	76.8%	64.9%
1s2xA00	1.20.190.30	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › CAG pathogenicity island protein, CagZ	0.51	42.0	3.73e-01	89.6%	68.3%
3b81A00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.50	42.0	3.65e-01	96.8%	60.7%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3689988	5001.1.1.85 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Fung_rhodopsin	0.59	52.0	4.06e-01	97.6%	87.4%
3295189	5041.1.1.0 ↗	extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C	0.55	48.0	4.37e-01	93.6%	89.7%
3653360	109.4.1.496 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec5	0.55	45.0	3.53e-01	88.0%	50.7%
3656716	3755.3.1.498 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF31016	0.55	39.0	3.72e-01	72.8%	98.6%
4258212	603.2.1.12 ↗	alpha bundles › STAT-like › STAT › STAT › 7tm_7	0.54	44.0	3.37e-01	88.8%	76.2%
4030302	7015.1.1.0 ↗	alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain	0.53	41.0	4.00e-01	88.0%	76.3%
3463843	5069.1.3.0 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits	0.52	41.0	4.07e-01	84.8%	79.8%
3595498	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	40.0	3.03e-01	84.0%	46.2%

D5 medium residues 496-621

PDB

Domain cluster: rep: coat_protein__YP_009182166__Ustilaginoidea_virens_RNA_virus_5__1756615__D455-595_610-622

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	140.9	6.00e-41	100.0%	19.7%