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coat_protein

Euk-Vir

Cherry_virus_Trakiya

coat_protein__YP_009551962__Cherry_virus_Trakiya__2074132

Identity

Accession:
YP_009551962 ↗
Protein ID:
coat_protein
Kingdom:
euk

Quality

69.0 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Cherry_virus_Trakiya

TaxID: 2074132

Cluster

View cluster (173 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 353-540
PDB
Domain cluster: rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF00915.27 best Calici_coat 39.8 3.60e-10 92.5% 47.3%
PF08762.17 CRPV_capsid 24.9 2.10e-05 92.0% 66.8%
PF00073.27 Rhv 51.0 2.00e-13 59.6% 50.3%
D2 medium residues 51-115_203-247
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.92 87.0 6.19e-01 99.1% 70.6%
3napC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.92 87.0 6.22e-01 99.1% 76.4%
5j98B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.91 86.0 6.30e-01 100.0% 78.5%
5mqcC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.90 85.0 6.23e-01 99.1% 76.2%
3vbhC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.90 85.0 6.35e-01 99.1% 79.3%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.90 86.0 6.28e-01 100.0% 69.8%
5aooC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.89 85.0 6.54e-01 100.0% 80.5%
4qpiC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.89 85.0 6.32e-01 100.0% 77.6%
3jb4C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.89 85.0 6.32e-01 99.1% 73.0%
4qpiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.89 84.0 6.54e-01 100.0% 77.9%
5mqcB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.87 82.0 6.20e-01 99.1% 74.9%
2ws9300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.86 81.0 6.25e-01 100.0% 81.4%
3cjiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.86 80.0 6.09e-01 99.1% 80.3%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.86 81.0 6.19e-01 100.0% 80.0%
3napB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.86 82.0 6.07e-01 100.0% 70.9%
1tme200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.85 79.0 5.88e-01 100.0% 82.7%
7dodB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.83 75.0 6.05e-01 95.5% 85.0%
5c8cB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.82 77.0 5.54e-01 100.0% 69.6%
2gh8A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.81 74.0 5.94e-01 98.2% 83.2%
2y26A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.77 64.0 4.44e-01 88.2% 46.8%
4nwvA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.76 70.0 5.76e-01 98.2% 90.2%
1cov100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.76 70.0 5.17e-01 100.0% 74.0%
6sk6A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.75 69.0 5.11e-01 100.0% 74.7%
4rs5A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.74 69.0 5.40e-01 100.0% 87.8%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.74 69.0 5.09e-01 100.0% 72.0%
1mec100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.72 66.0 4.85e-01 99.1% 81.4%
5jzgA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.72 67.0 5.18e-01 100.0% 79.6%
3cjiA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 64.0 4.85e-01 99.1% 86.0%
2ws9100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 62.0 4.75e-01 98.2% 79.7%
2x1wL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 38.0 3.92e-01 100.0% 63.8%
4xvhA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 39.0 3.94e-01 88.2% 68.2%
3v4vB01 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.58 39.0 3.78e-01 100.0% 59.4%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 4.03e-01 92.7% 58.0%
1ohfA02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.47e-01 98.2% 92.9%
7b0xI01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.53 44.0 4.18e-01 90.9% 100.0%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.53 42.0 3.19e-01 86.4% 75.5%
2xg5B01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.53 43.0 4.09e-01 90.9% 100.0%
7t4dA01 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.52 46.0 3.46e-01 100.0% 66.9%
8begA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 47.0 4.16e-01 100.0% 75.8%
2uy6C01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.52 43.0 4.03e-01 91.8% 100.0%
6ncyA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 41.0 3.44e-01 98.2% 48.4%
5vqfD01 2.60.120.970 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.50e-01 93.6% 87.2%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 4.02e-01 88.2% 85.6%
2bbaA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 42.0 3.59e-01 90.0% 65.9%
2xbtA00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.51 45.0 4.03e-01 97.3% 68.4%
3v9fA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 4.16e-01 90.0% 86.8%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2099164 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.92 87.0 6.19e-01 99.1% 70.6%
140024 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.92 87.0 6.22e-01 99.1% 76.4%
2414126 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.91 86.0 6.42e-01 99.1% 74.3%
2389609 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.91 86.0 6.45e-01 100.0% 77.4%
1933849 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.90 86.0 6.58e-01 100.0% 80.3%
1949031 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.90 85.0 6.23e-01 99.1% 76.2%
2044957 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.90 86.0 6.34e-01 100.0% 76.8%
2982483 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.90 85.0 6.39e-01 99.1% 79.3%
1211 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.90 86.0 6.28e-01 100.0% 69.8%
2439648 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.90 84.0 6.09e-01 99.1% 73.6%
1405130 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.89 85.0 6.32e-01 100.0% 77.6%
1697855 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.89 85.0 6.32e-01 99.1% 73.0%
2099184 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.89 85.0 5.97e-01 100.0% 75.0%
2440135 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.89 84.0 6.39e-01 99.1% 83.0%
1400716 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.89 84.0 6.54e-01 100.0% 77.9%
2726763 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.88 83.0 5.95e-01 99.1% 77.9%
2721878 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.87 83.0 6.14e-01 100.0% 78.8%
2579094 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.87 83.0 6.06e-01 100.0% 76.6%
1949032 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.87 82.0 6.20e-01 99.1% 74.9%
31099 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.86 81.0 6.19e-01 100.0% 80.0%
140027 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.86 82.0 6.07e-01 100.0% 70.9%
1841617 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.86 81.0 6.00e-01 100.0% 77.4%
2100469 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.86 80.0 5.95e-01 100.0% 78.9%
2099173 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.85 80.0 5.85e-01 100.0% 83.6%
1867996 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.85 79.0 5.82e-01 99.1% 65.4%
1696117 10.2.1.13 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat 0.84 77.0 6.30e-01 96.4% 89.1%
2793614 10.2.1.13 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat 0.84 79.0 6.18e-01 100.0% 81.3%
4768609 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.82 76.0 5.60e-01 100.0% 81.5%
2982736 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.82 77.0 5.83e-01 100.0% 75.1%
2579093 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.81 76.0 5.84e-01 100.0% 77.1%
1693517 10.2.1.13 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat 0.81 74.0 5.90e-01 96.4% 83.0%
3075118 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.81 75.0 5.57e-01 100.0% 81.3%
2330242 10.2.1.24 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Como_LCP 0.78 66.0 5.54e-01 90.9% 88.5%
143448 10.2.1.38 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat_N 0.77 64.0 5.54e-01 88.2% 97.0%
2880697 10.2.1.69 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.75 69.0 4.96e-01 100.0% 70.7%
1204 10.2.1.69 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.75 69.0 5.00e-01 100.0% 69.1%
1713715 10.2.1.69 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.75 69.0 5.00e-01 100.0% 69.1%
2526957 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.74 68.0 4.99e-01 100.0% 70.5%
152483 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.74 68.0 5.00e-01 100.0% 70.0%
1043486 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.74 68.0 4.96e-01 100.0% 72.6%
148379 10.2.1.69 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.73 67.0 4.81e-01 100.0% 66.7%
2884840 10.2.1.50 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.72 66.0 4.80e-01 100.0% 67.6%
1694889 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.71 66.0 5.19e-01 99.1% 72.6%
169770 10.2.1.69 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.71 64.0 4.85e-01 99.1% 86.0%
1886797 10.2.1.69 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.70 61.0 4.72e-01 98.2% 75.5%
1106655 10.2.1.69 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.69 63.0 5.07e-01 100.0% 97.5%
2326112 10.32.1.56 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CE2_N 0.59 39.0 3.93e-01 88.2% 67.6%
3879285 10.4.1.23 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CDCP1_CUB_6 0.58 40.0 3.90e-01 91.8% 64.2%
4025872 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.58 46.0 4.83e-01 91.8% 98.9%
4440530 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 49.0 4.44e-01 90.9% 90.3%
4190241 12.1.1.44 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_5_C 0.57 43.0 4.39e-01 87.3% 80.9%
3612751 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 49.0 4.57e-01 98.2% 78.6%
4446415 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 41.0 4.01e-01 100.0% 70.8%
3491698 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 48.0 4.19e-01 100.0% 67.1%
5058190 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.54 45.0 4.62e-01 94.5% 94.4%
3273186 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.54 41.0 3.63e-01 100.0% 54.5%
3701894 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 47.0 4.52e-01 98.2% 84.8%
3807465 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 42.0 3.74e-01 100.0% 58.2%
3479980 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 4.01e-01 100.0% 70.7%
4596982 11.1.5.21 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › SCPU 0.52 46.0 4.18e-01 100.0% 73.8%
5070959 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 37.0 3.95e-01 98.2% 88.4%
3792957 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.51 43.0 3.93e-01 90.0% 100.0%
5034825 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 43.0 4.04e-01 91.8% 99.3%
3743199 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 4.00e-01 89.1% 84.8%
3891099 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.50 40.0 3.70e-01 90.9% 65.5%
D3 medium residues 116-134_147-202
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3napB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.78 69.0 4.69e-01 100.0% 28.7%
4qpiC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.72 63.0 4.40e-01 100.0% 29.7%
4rs5A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 61.0 4.34e-01 98.7% 37.6%
6aj3B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 57.0 4.42e-01 98.7% 54.8%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
140027 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.78 69.0 4.69e-01 100.0% 28.7%
5047105 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 41.0 3.39e-01 98.7% 42.9%
D4 medium residues 583-614_661-772
PDB
D5 medium residues 631-660_773-789
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6gvdA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 37.0 2.33e-01 78.7% 80.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4152175 2002.1.1.74 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2 0.52 40.0 2.54e-01 100.0% 28.9%
4964373 2002.1.1.74 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2 0.52 40.0 2.52e-01 100.0% 27.4%
4478854 2003.1.5.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltr_RsmB-F 0.51 37.0 2.48e-01 87.2% 64.6%