←Back to structures
coat_protein
Euk-VirSalvia_hispanica_RNA_virus_1
coat_protein__YP_009553031__Salvia_hispanica_RNA_virus_1__2419805
Identity
- Accession:
- YP_009553031 ↗
- Protein ID:
- coat_protein
- Kingdom:
- euk
Quality
70.6
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Duplopiviricetes›
Durnavirales›
Amalgaviridae›
Salvia_hispanica_RNA_virus_1
TaxID: 2419805
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-122
Domain cluster:
rep: putative_fusion_protein__YP_003868436__Rhododendron_virus_A__878260__D37-144
D2
medium
residues 185-302
Domain cluster:
rep: putative_coat_protein__YP_009388305__Spinach_amalgavirus_1__1985164__D195-305
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5an3A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.77 | 39.0 | 3.83e-01 | 100.0% | 45.7% |
| 4gywA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.71 | 37.0 | 3.94e-01 | 100.0% | 57.1% |
| 2xevB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.71 | 38.0 | 3.76e-01 | 98.3% | 50.0% |
| 7tj4A01 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 35.0 | 3.55e-01 | 100.0% | 50.8% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.55 | 30.0 | 2.83e-01 | 85.6% | 40.8% |
| 2fbnA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 44.0 | 4.05e-01 | 100.0% | 66.7% |
| 4f91B04 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.52 | 42.0 | 3.94e-01 | 87.3% | 70.4% |
| 1omsA00 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.50 | 41.0 | 4.23e-01 | 89.0% | 94.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4012537 | 109.4.1.185 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC5 | 0.67 | 41.0 | 2.56e-01 | 100.0% | 12.5% |
| 3457721 | 109.4.1.1261 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long | 0.63 | 38.0 | 3.57e-01 | 100.0% | 50.0% |
| 3338770 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 34.0 | 2.96e-01 | 100.0% | 37.1% |
| 3647085 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.54 | 41.0 | 3.44e-01 | 79.7% | 98.1% |
| 5030859 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.53 | 31.0 | 3.13e-01 | 87.3% | 55.8% |