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coat_protein

Euk-Vir

Chalara_elegans_RNA_Virus_1

coat_protein__YP_024727__Chalara_elegans_RNA_Virus_1__267285

Identity

Accession:: YP_024727 ↗
Protein ID:: coat_protein
Kingdom:: euk

Quality

71.9 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Pseudototiviridae› Victorivirus› Chalara_elegans_RNA_Virus_1

TaxID: 267285

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-76_587-599

PDB

Domain cluster: rep: coat_protein__YP_009004155__Ustilaginoidea_virens_RNA_virus_3__1460374__D17-72_452-464_584-610

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	62.8	2.70e-17	85.4%	10.6%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1m1cA00	3.90.1840.10	Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein	0.59	48.0	2.89e-01	89.9%	92.5%
2hv2A01	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.56	39.0	3.85e-01	93.3%	67.4%
1mkfA02	2.60.40.1340	Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like	0.53	45.0	3.58e-01	91.0%	76.7%
4l8hB00	3.30.380.10	Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein	0.53	36.0	3.26e-01	70.8%	71.5%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3391461	3308.2.1.1 ↗	beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › 4_1_CTD	0.63	35.0	3.84e-01	84.3%	65.3%
7654	4065.1.1.1 ↗	a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › LA-virus_coat	0.59	48.0	2.89e-01	89.9%	92.5%
3739782	9.2.1.3 ↗	beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C	0.58	42.0	3.46e-01	75.3%	98.1%
5028778	3860.1.1.0 ↗	alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm	0.57	39.0	2.97e-01	70.8%	53.0%
5034346	207.2.1.13 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD	0.53	36.0	2.52e-01	70.8%	59.8%
4466937	11.1.1.248 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG6	0.53	40.0	3.57e-01	82.0%	70.8%
4886985	7523.1.1.16 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › DctP	0.52	26.0	2.34e-01	80.9%	30.4%
5056319	177.1.1.0 ↗	alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease	0.51	39.0	3.12e-01	83.1%	82.2%

D2 medium residues 77-232

PDB

Domain cluster: rep: coat_protein__YP_009212847__Penicillium_aurantiogriseum_totivirus_1__1755467__D82-115_136-208_280-306

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	219.2	1.20e-64	100.0%	24.6%

D3 medium residues 233-307_385-404

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	38.6	5.40e-10	86.3%	10.2%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3p9xA00	3.40.50.170	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain	0.52	40.0	3.19e-01	83.2%	98.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3263287	150.7.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE	0.51	23.0	2.49e-01	76.8%	49.4%

D4 medium residues 308-384_405-458

PDB

Domain cluster: rep: coat_protein__YP_009072432__Botryosphaeria_dothidea_victorivirus_1__1547580__D309-450

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	81.7	5.00e-23	59.5%	12.0%
PF05518.18	Totivirus_coat	71.9	4.70e-20	43.5%	8.4%

D5 medium residues 459-586_613-643

PDB

Domain cluster: rep: coat_protein__YP_009182166__Ustilaginoidea_virens_RNA_virus_5__1756615__D455-595_610-622

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	186.6	9.00e-55	81.8%	20.2%