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coat_protein
Euk-VirStrawberry_pallidosis-associated_virus
coat_protein__YP_025089__Strawberry_pallidosis-associated_virus__227507
Identity
- Accession:
- YP_025089 ↗
- Protein ID:
- coat_protein
- Kingdom:
- euk
Quality
70.9
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Crinivirus›
Strawberry_pallidosis-associated_virus
TaxID: 227507
Cluster
View cluster (22 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 186-232
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01785.23 best | Closter_coat | 31.4 | 1.60e-07 | 100.0% | 24.3% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ql3A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.60 | 44.0 | 3.46e-01 | 78.7% | 99.0% |
| 4im9B00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.59 | 46.0 | 3.34e-01 | 95.7% | 30.4% |
| 7zs9401 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.54 | 48.0 | 3.08e-01 | 100.0% | 45.7% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3451722 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.67 | 54.0 | 4.04e-01 | 91.5% | 83.2% |
| 3200743 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.60 | 53.0 | 3.11e-01 | 100.0% | 63.7% |
| 4029451 | 2496.1.1.1 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › CRAL_TRIO | 0.58 | 50.0 | 3.22e-01 | 95.7% | 27.1% |
| 5048303 | 2007.1.11.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains | 0.57 | 50.0 | 3.53e-01 | 97.9% | 35.0% |
| 3610336 | 4120.1.1.1 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › zf-Tim10_DDP | 0.55 | 46.0 | 3.79e-01 | 100.0% | 51.8% |
| 3177457 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.55 | 45.0 | 3.06e-01 | 93.6% | 61.1% |
| 4557434 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 46.0 | 2.91e-01 | 100.0% | 31.2% |