coat_protein

Euk-Vir

Raphanus_sativus_cryptic_virus_1

coat_protein__YP_656505__Raphanus_sativus_cryptic_virus_1__348449

Identity

59.4 mean pLDDT

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Partitiviridae› Raphanus_sativus_cryptic_virus_1

TaxID: 348449

View cluster (9 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 102-234_341-400

PDB

Domain cluster: rep: coat_protein__YP_009508045__Carrot_cryptic_virus__589918__D88-201_328-358

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1zoyD00	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.62	26.0	3.44e-01	90.7%	69.6%
2ycdA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.52	27.0	3.28e-01	75.6%	76.1%
2y0nC00	1.10.274.30	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › MRG domain	0.51	35.0	3.78e-01	90.2%	82.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4015907	601.33.1.14 ↗	alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › Erg28	0.52	22.0	3.36e-01	75.1%	91.7%
1145641	191.1.1.27 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_25	0.51	25.0	2.97e-01	75.1%	65.0%

D2 medium residues 235-340

PDB