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coat_protein_movement_protein

Euk-Vir

Sweet_potato_collusive_virus

coat_protein_movement_protein__YP_004347414__Sweet_potato_collusive_virus__930168

Identity

Accession:
YP_004347414 ↗
Protein ID:
coat_protein_movement_protein
Kingdom:
euk

Quality

58.3 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Cavemovirus› Sweet_potato_collusive_virus

TaxID: 930168

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 468-552
PDB
Domain cluster: rep: putative_coat_protein__NP_569139__Tobacco_vein_clearing_virus__107324__D233-327
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zu2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.71 45.0 3.64e-01 100.0% 34.8%
2ddhA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.71 50.0 4.40e-01 88.2% 52.5%
2dbdA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.67 48.0 4.51e-01 90.6% 60.7%
4abnA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 42.0 2.87e-01 98.8% 19.7%
3ly7A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 40.0 3.21e-01 97.6% 32.3%
2yy5A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.58 52.0 4.66e-01 100.0% 84.0%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.58 42.0 4.14e-01 76.5% 73.9%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.57 46.0 3.99e-01 91.8% 61.0%
3fnrA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.57 45.0 3.77e-01 100.0% 49.7%
2v6eA02 1.20.1440.270 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.55 42.0 3.69e-01 90.6% 53.5%
4l7aA00 3.40.390.70 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › 0.55 40.0 2.89e-01 77.6% 61.3%
2xmzA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 44.0 3.12e-01 88.2% 52.3%
2uytA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 45.0 3.28e-01 92.9% 72.1%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.53 45.0 4.60e-01 97.6% 95.1%
2iu5B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 44.0 3.63e-01 100.0% 61.0%
4pt1B00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.52 46.0 4.04e-01 100.0% 82.8%
3d3yA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 46.0 3.30e-01 98.8% 61.7%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3309680 170.1.1.26 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › DUF7746 0.88 82.0 7.45e-01 100.0% 92.7%
3375038 170.2.1.25 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF7746 0.87 70.0 7.47e-01 100.0% 96.0%
3377431 170.1.1.26 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › DUF7746 0.87 70.0 7.43e-01 100.0% 96.0%
3299467 170.2.1.25 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF7746 0.87 81.0 7.35e-01 100.0% 92.7%
3568204 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.85 66.0 7.11e-01 100.0% 94.5%
3300490 170.2.1.32 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › PF28884 0.85 75.0 7.53e-01 100.0% 95.3%
3518810 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.84 63.0 6.84e-01 100.0% 94.3%
3501194 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.84 64.0 7.01e-01 100.0% 97.1%
3529284 170.1.1.22 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › PF30901 0.84 62.0 6.08e-01 100.0% 72.2%
3927258 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.83 66.0 6.79e-01 100.0% 88.7%
3573690 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.83 62.0 6.79e-01 100.0% 95.7%
3926178 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.82 60.0 6.57e-01 100.0% 92.9%
3938017 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.82 61.0 6.62e-01 100.0% 94.3%
3510252 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.82 61.0 6.60e-01 100.0% 94.3%
3436591 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.81 57.0 6.44e-01 94.1% 96.9%
3205454 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.80 70.0 7.00e-01 100.0% 91.8%
3324259 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.79 71.0 6.91e-01 100.0% 96.8%
3937208 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.78 62.0 6.55e-01 100.0% 96.0%
3928749 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.75 63.0 6.26e-01 100.0% 86.7%
3639813 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.71 58.0 5.97e-01 100.0% 96.2%
3177791 170.1.1.37 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › PF29703 0.67 58.0 5.66e-01 100.0% 91.6%
3936342 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.66 52.0 5.50e-01 100.0% 96.0%
4943152 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.59 46.0 4.18e-01 100.0% 63.6%
5029785 633.22.1.1 ↗ alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › VKOR 0.56 45.0 3.82e-01 100.0% 52.1%
3282266 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.56 44.0 4.15e-01 87.1% 100.0%
4990287 4323.1.1.0 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.53 35.0 3.23e-01 91.8% 50.4%
3366443 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 42.0 3.86e-01 94.1% 90.4%
3941632 1051.1.1.0 ↗ alpha superhelices › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain 0.51 40.0 3.78e-01 83.5% 86.7%
5047181 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 41.0 3.07e-01 88.2% 72.4%
3256661 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 45.0 3.64e-01 98.8% 64.2%
3715667 192.4.1.18 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › PF26116 0.50 45.0 4.35e-01 100.0% 87.4%
3213526 192.5.1.14 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.50 46.0 4.27e-01 100.0% 86.7%
D2 high residues 873-1046
PDB
Domain cluster: rep: putative_P3_protein__YP_010087626__Cytorhabdovirus_fragariae__2676436__D7-146
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01107.24 best MP 166.9 5.70e-49 96.5% 81.2%
D3 high residues 1120-1263
PDB
Domain cluster: rep: NC_029048.2__YP_009221738.1__PHICD211_20135__00153__D2-127
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s8iA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.84 68.0 7.37e-01 95.8% 98.4%
1fmbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.81 53.0 6.20e-01 77.8% 92.3%
2fivA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.77 54.0 6.03e-01 77.8% 91.2%
2jysA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.77 48.0 5.88e-01 86.8% 98.9%
1a94A00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.76 48.0 5.63e-01 77.8% 91.9%
3sqfA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.74 48.0 5.79e-01 81.9% 100.0%
5c9dB00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.74 53.0 5.79e-01 81.2% 89.2%
1yg9A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.63 50.0 5.27e-01 84.0% 100.0%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 33.0 4.12e-01 96.5% 94.4%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 26.0 3.20e-01 91.0% 82.5%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3427964 1.1.1.17 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 0.89 75.0 7.77e-01 94.4% 92.6%
3496964 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.88 72.0 7.71e-01 92.4% 96.0%
3925981 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.87 61.0 7.01e-01 88.9% 93.6%
3782336 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.87 76.0 8.04e-01 95.8% 100.0%
3938396 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.87 62.0 7.24e-01 77.8% 100.0%
3168921 304.48.1.105 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Peptidase_A2B 0.87 59.0 7.12e-01 86.8% 100.0%
3173885 2484.1.1.307 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A2B 0.86 60.0 7.04e-01 88.2% 97.1%
3924493 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.86 55.0 6.77e-01 81.2% 98.9%
3821648 1.1.1.17 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 0.85 70.0 7.56e-01 89.6% 98.4%
3504655 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.85 61.0 6.83e-01 79.9% 91.3%
3608668 1.1.1.6 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease 0.85 69.0 6.82e-01 95.1% 80.7%
3737912 1.1.1.13 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Peptidase_A2_2 0.85 57.0 6.84e-01 81.9% 99.0%
3833862 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.85 65.0 7.21e-01 84.0% 98.3%
3933423 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.84 61.0 6.98e-01 79.2% 97.3%
3510736 1.1.1.3 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.84 64.0 7.12e-01 86.1% 97.4%
3926561 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.84 66.0 7.24e-01 94.4% 98.3%
3785193 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.84 56.0 6.49e-01 79.2% 92.4%
3797665 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.83 69.0 6.95e-01 95.1% 85.5%
3923810 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.83 62.0 6.87e-01 79.2% 94.8%
3868675 1.1.1.6 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease 0.83 71.0 6.67e-01 95.1% 75.3%
3668951 1.1.1.17 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 0.83 51.0 6.45e-01 70.1% 100.0%
3447999 1.1.1.17 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 0.83 66.0 7.25e-01 88.9% 100.0%
3684739 1.1.1.30 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 0.82 65.0 7.15e-01 86.1% 99.2%
4984762 1.1.1.17 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 0.82 64.0 7.01e-01 83.3% 96.7%
3933760 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.82 60.0 6.82e-01 78.5% 98.2%
3732052 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.82 61.0 6.92e-01 81.2% 100.0%
3262861 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.81 61.0 6.74e-01 87.5% 95.7%
3930502 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.81 61.0 6.89e-01 79.9% 100.0%
3939777 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.81 66.0 7.05e-01 91.7% 97.6%
3518811 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.81 60.0 6.86e-01 80.6% 100.0%
3724372 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.80 59.0 5.73e-01 76.4% 69.7%
3334785 1.1.1.3 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.80 66.0 6.89e-01 91.7% 94.6%
3931384 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.80 59.0 6.70e-01 91.0% 99.1%
3924865 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.80 61.0 6.64e-01 90.3% 94.2%
5001647 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.80 59.0 6.74e-01 76.4% 100.0%
3541617 1.1.1.6 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease 0.80 63.0 6.89e-01 91.7% 97.5%
3902845 1.1.1.30 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 0.80 67.0 7.03e-01 86.8% 97.7%
3249073 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.79 63.0 6.82e-01 91.0% 99.2%
3912599 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.79 63.0 6.94e-01 91.7% 99.2%
4933012 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.79 63.0 6.86e-01 87.5% 99.2%
3934416 1.1.1.17 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 0.79 57.0 6.19e-01 91.0% 88.3%
3878578 1.1.1.30 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 0.79 65.0 6.95e-01 86.1% 98.4%
3883471 1.1.1.30 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 0.79 65.0 6.88e-01 86.1% 97.7%
3972732 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.79 59.0 6.19e-01 85.4% 86.0%
4934668 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.79 65.0 6.86e-01 86.1% 99.2%
3731145 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.79 59.0 6.32e-01 78.5% 88.8%
3502254 1.1.1.19 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.78 51.0 6.21e-01 71.5% 100.0%
3730035 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.78 54.0 6.32e-01 74.3% 100.0%
3936343 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.78 60.0 6.46e-01 91.7% 92.0%
3515226 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.78 55.0 6.31e-01 78.5% 98.1%
3924552 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.78 59.0 6.44e-01 86.1% 94.2%
5023444 1.1.1.5 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Zn_protease 0.78 58.0 6.53e-01 89.6% 100.0%
3559341 1.1.1.30 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 0.78 65.0 6.59e-01 86.8% 91.4%
4933116 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.77 59.0 6.50e-01 86.1% 98.3%
3505920 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.77 54.0 6.13e-01 78.5% 93.6%
3927612 1.1.1.17 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 0.77 58.0 6.47e-01 86.1% 97.4%
3970790 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.77 58.0 6.20e-01 84.7% 90.3%
3529283 1.1.1.30 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 0.77 63.0 6.74e-01 84.7% 100.0%
3513377 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.77 55.0 6.26e-01 89.6% 100.0%
5032107 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.77 63.0 6.65e-01 86.1% 99.2%
3929267 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.77 54.0 5.93e-01 91.0% 87.5%
3935726 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.77 57.0 6.32e-01 81.2% 96.5%
3937611 1.1.1.17 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 0.76 55.0 6.23e-01 91.0% 97.3%
3579423 1.1.1.14 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 0.76 66.0 6.50e-01 90.3% 98.7%
3927455 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.76 65.0 6.85e-01 93.8% 100.0%
4494100 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.76 57.0 6.00e-01 82.6% 86.7%
3933744 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.76 53.0 6.01e-01 81.2% 93.6%
3931849 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.76 58.0 6.23e-01 86.1% 92.0%
3931343 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.75 55.0 6.13e-01 89.6% 94.8%
3926190 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.75 58.0 5.64e-01 86.8% 72.5%
3929659 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.75 63.0 6.55e-01 92.4% 94.8%
4993154 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.75 57.0 6.03e-01 86.1% 89.1%
3936605 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.74 53.0 5.95e-01 91.0% 95.5%
3509026 1.1.1.14 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 0.74 64.0 6.04e-01 91.0% 97.1%
3514088 1.1.1.14 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 0.74 63.0 6.53e-01 91.0% 95.5%
4992554 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.74 60.0 5.96e-01 85.4% 82.6%
3506977 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.72 63.0 6.33e-01 91.0% 96.5%
3579212 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.72 51.0 6.01e-01 72.9% 100.0%
4027119 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.72 58.0 6.02e-01 85.4% 92.6%
3366156 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.71 56.0 6.11e-01 88.2% 100.0%
3516105 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.70 61.0 6.31e-01 91.7% 97.8%
3846274 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.70 53.0 5.95e-01 91.7% 99.1%
3507687 1.1.1.14 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 0.69 59.0 6.23e-01 91.0% 99.2%
3285634 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 33.0 4.10e-01 83.3% 76.7%
4955491 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.66 57.0 5.90e-01 95.1% 99.3%
3633076 1.1.1.30 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 0.60 35.0 3.98e-01 70.1% 77.1%
D4 medium residues 560-659
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22909.2 best Caulimovir_coat_dom 39.3 1.00e-09 94.0% 73.5%
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3i9wA00 1.20.58.920 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 49.0 3.54e-01 70.0% 90.0%
3ls1A00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.61 42.0 3.91e-01 71.0% 73.7%
3cf6E03 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.59 42.0 3.82e-01 73.0% 96.9%
1orsC00 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.58 50.0 4.55e-01 100.0% 70.5%
3zheC01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 48.0 3.93e-01 90.0% 60.3%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.58 43.0 3.97e-01 79.0% 96.2%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 48.0 4.33e-01 100.0% 99.3%
3axjB01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.55 46.0 3.99e-01 91.0% 78.1%
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.55 49.0 4.50e-01 98.0% 100.0%
4qhpA05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.55 40.0 2.89e-01 79.0% 44.3%
2y1vA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.74e-01 93.0% 74.6%
4g12A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 47.0 4.17e-01 99.0% 98.0%
3pwxA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.54 47.0 3.89e-01 100.0% 52.7%
5x56B00 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.54 40.0 4.02e-01 96.0% 76.2%
2y8nA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.54 43.0 2.55e-01 88.0% 79.4%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 46.0 4.26e-01 100.0% 99.2%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 45.0 4.14e-01 99.0% 71.5%
2pbxA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 44.0 3.68e-01 97.0% 91.9%
1yq1A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 41.0 4.04e-01 86.0% 84.8%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 42.0 4.09e-01 87.0% 83.0%
3fcnA00 1.20.1220.20 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Uncharcterised protein PF01724 0.52 45.0 3.96e-01 100.0% 98.1%
3rx6A00 1.20.58.1090 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer 0.52 42.0 3.43e-01 88.0% 87.7%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.52 41.0 4.10e-01 89.0% 87.9%
3k9vA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 45.0 2.97e-01 100.0% 71.3%
3m0fB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 35.0 3.38e-01 95.0% 58.5%
2vzbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 45.0 3.84e-01 100.0% 88.0%
6srbA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 41.0 3.98e-01 87.0% 82.6%
2pfdA03 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.50 45.0 3.59e-01 100.0% 57.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3366265 170.1.1.15 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 0.73 64.0 6.23e-01 100.0% 88.2%
3519399 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.72 57.0 5.98e-01 97.0% 94.4%
3510718 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.72 56.0 5.78e-01 97.0% 88.4%
3491020 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.68 46.0 3.97e-01 70.0% 68.4%
3924866 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.67 52.0 5.36e-01 94.0% 88.4%
3497540 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.64 47.0 3.61e-01 78.0% 66.9%
3988781 604.6.1.63 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › DUF3169 0.60 47.0 4.27e-01 84.0% 88.9%
5059993 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.58 43.0 4.41e-01 80.0% 89.9%
3194115 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 45.0 2.75e-01 96.0% 13.1%
3711850 109.4.1.202 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.58 38.0 3.43e-01 77.0% 46.5%
4028809 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.57 39.0 3.59e-01 71.0% 79.2%
3893417 601.1.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › CAS_C 0.57 41.0 3.79e-01 77.0% 88.1%
3172093 604.1.1.132 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KAR9 0.54 46.0 4.32e-01 95.0% 75.2%
3391380 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.53 48.0 4.75e-01 98.0% 94.3%
3236795 601.16.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › Focal_AT 0.53 44.0 4.01e-01 99.0% 66.4%
3998998 601.16.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › Focal_AT 0.53 46.0 4.01e-01 95.0% 66.9%
3172034 1065.1.1.1 ↗ alpha bundles › SPX domain › SPX domain › SPX domain › SPX 0.52 46.0 3.78e-01 100.0% 67.0%
4578841 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.52 43.0 4.47e-01 94.0% 100.0%
3916044 3684.1.1.35 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › JMY 0.51 46.0 3.95e-01 100.0% 87.5%
3226256 3684.1.1.0 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.51 45.0 3.95e-01 100.0% 70.3%
3939933 601.1.2.4 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_R4 0.51 43.0 3.83e-01 93.0% 64.8%
3687352 3684.1.1.0 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.50 44.0 3.96e-01 99.0% 74.5%