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coat_protein_readthrough
Euk-VirSoil-borne_cereal_mosaic_virus
coat_protein_readthrough__NP_059146__Soil-borne_cereal_mosaic_virus__100887
Identity
- Accession:
- NP_059146 ↗
- Protein ID:
- coat_protein_readthrough
- Kingdom:
- euk
Quality
58.8
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Virgaviridae›
Furovirus›
Soil-borne_cereal_mosaic_virus
TaxID: 100887
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 46-150_170-216_218-260
Domain cluster:
rep: hypothetical_protein__YP_009337424__Hubei_virga-like_virus_1__1923324__D95-184_198-245
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00721.28 best | TMV_coat | 75.9 | 6.40e-21 | 75.9% | 100.0% |
D2
medium
residues 325-387
D3
medium
residues 395-489
Domain cluster:
rep: coat_protein_readthrough__NP_059485__Oat_golden_stripe_virus__45103__D359-426
D4
medium
residues 490-592
Domain cluster:
rep: 104K_protein__NP_612623__Beet_soil-borne_virus__46436__D470-560
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.88 | 34.0 | 4.02e-01 | 86.4% | 51.9% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.81 | 32.0 | 3.46e-01 | 81.6% | 44.0% |
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 45.0 | 4.72e-01 | 80.6% | 84.6% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.57 | 48.0 | 4.99e-01 | 93.2% | 97.9% |
| 2ap3A00 | 1.20.120.570 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YkyA-like | 0.52 | 45.0 | 3.68e-01 | 95.1% | 74.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3304829 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.72 | 56.0 | 4.78e-01 | 83.5% | 77.4% |
| 3851383 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.67 | 53.0 | 3.72e-01 | 83.5% | 33.4% |
| 3192478 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.63 | 49.0 | 3.84e-01 | 83.5% | 84.5% |
| 3367913 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.61 | 54.0 | 4.84e-01 | 96.1% | 94.3% |
| 3619200 | 192.15.1.76 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CUPID | 0.57 | 40.0 | 3.53e-01 | 73.8% | 69.0% |
| 3248284 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.57 | 49.0 | 4.87e-01 | 91.3% | 100.0% |
| 3441338 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.55 | 40.0 | 4.06e-01 | 74.8% | 100.0% |
| 4434200 | 142.1.1.5 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI | 0.51 | 44.0 | 4.32e-01 | 91.3% | 97.3% |
D5
medium
residues 617-627_643-696