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coat_protein_readthrough

Euk-Vir

Wheat_yellow_dwarf_virus-GPV

coat_protein_readthrough__YP_003029840__Wheat_yellow_dwarf_virus-GPV__572239

Identity

Accession:
YP_003029840 ↗
Protein ID:
coat_protein_readthrough
Kingdom:
euk

Quality

64.9 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Sobelivirales› Solemoviridae› Polerovirus› Wheat_yellow_dwarf_virus-GPV

TaxID: 572239

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 63-200
PDB
Domain cluster: rep: putative_P3_protein__YP_010087626__Cytorhabdovirus_fragariae__2676436__D7-146
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00894.25 best Luteo_coat 185.1 8.30e-55 99.3% 100.0%
D2 medium residues 231-291
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01690.22 best PLRV_ORF5 48.5 7.80e-13 100.0% 11.6%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 35.0 3.35e-01 100.0% 47.3%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.59 45.0 3.62e-01 86.9% 59.0%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 36.0 3.20e-01 100.0% 40.2%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 44.0 3.82e-01 100.0% 52.4%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 37.0 3.85e-01 90.2% 76.8%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.55 42.0 3.73e-01 96.7% 56.4%
6vg1A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.54 40.0 3.58e-01 83.6% 73.1%
2zpmA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 45.0 4.09e-01 98.4% 70.9%
1auiA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.53 41.0 2.59e-01 90.2% 70.1%
7w6yA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 45.0 4.14e-01 100.0% 74.1%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.53 34.0 3.81e-01 88.5% 100.0%
4h8wC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.46e-01 75.4% 66.7%
6etzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.44e-01 78.7% 64.3%
5azpA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.52 38.0 3.59e-01 86.9% 63.0%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.52 43.0 2.86e-01 100.0% 34.8%
2hsiA01 2.60.40.1590 Mainly Beta › Sandwich › Immunoglobulin-like › Peptidoglycan hydrolase domains 0.52 40.0 3.64e-01 85.2% 69.5%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.47e-01 98.4% 80.9%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.51 34.0 3.32e-01 95.1% 60.0%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.28e-01 100.0% 38.1%
3fcsA04 2.60.40.1530 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 4 0.50 42.0 3.20e-01 100.0% 80.5%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 38.0 3.21e-01 83.6% 80.4%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3221974 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 49.0 4.14e-01 100.0% 49.5%
3832022 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.61 51.0 3.30e-01 100.0% 28.1%
4951650 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.59 42.0 2.81e-01 75.4% 42.3%
3788782 2004.1.1.199 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.58 44.0 2.65e-01 100.0% 10.5%
1281147 9.23.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_3 0.57 44.0 3.87e-01 96.7% 56.4%
5027088 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 3.51e-01 90.2% 72.6%
3332442 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 41.0 4.06e-01 85.2% 79.7%
5042559 11.1.1.80 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP_beta 0.55 42.0 3.60e-01 88.5% 70.0%
3988269 3114.1.1.1 ↗ beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › MucBP 0.55 41.0 3.78e-01 85.2% 82.4%
3964841 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.54 47.0 4.04e-01 100.0% 62.0%
4847872 230.1.1.5 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.53 40.0 3.43e-01 88.5% 90.5%
4396837 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.53 45.0 3.65e-01 100.0% 52.8%
4964766 1.1.1.5 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Zn_protease 0.53 40.0 3.29e-01 82.0% 71.8%
4953724 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 3.76e-01 100.0% 81.9%
5002194 11.1.1.38 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_2 0.52 41.0 3.85e-01 96.7% 78.8%
D3 medium residues 292-303_320-377
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01690.22 best PLRV_ORF5 58.2 9.10e-16 100.0% 11.6%
D4 medium residues 304-319_378-426
PDB
Domain cluster: rep: P3-P5_fusion_protein__YP_010086857__Faba_bean_polerovirus_1__2283388__D304-328_403-431
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01690.22 best PLRV_ORF5 55.8 4.80e-15 75.4% 9.3%