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collagen-like_protein_4

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

collagen-like_protein_4__YP_003986736__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:
YP_003986736 ↗
Protein ID:
collagen-like_protein_4
Kingdom:
euk

Quality

52.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Mimivirus› Acanthamoeba_polyphaga_mimivirus

TaxID: 212035

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 575-611_623-707_803-815
PDB
Domain cluster: rep: MW584195.1__QSM04178.1__PROPHIGD51-2_40__00040__D376-428_443-519_647-661
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yllA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 36.0 4.24e-01 100.0% 81.5%
3fjsC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 31.0 3.48e-01 100.0% 67.3%
2gu9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 33.0 3.68e-01 100.0% 75.7%
3rnsA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 30.0 3.32e-01 99.3% 68.5%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.53 31.0 3.31e-01 100.0% 65.8%
1fepA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.52 43.0 2.89e-01 90.4% 32.5%
4mloA01 2.60.120.810 Mainly Beta › Sandwich › Jelly Rolls › 0.52 32.0 3.10e-01 100.0% 52.8%
6aiiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 3.45e-01 100.0% 91.8%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028545 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.61 34.0 4.29e-01 100.0% 97.3%
5083781 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 39.0 3.61e-01 100.0% 51.8%
5042218 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 39.0 4.59e-01 100.0% 97.9%
3916306 10.32.1.179 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › NDNF_C 0.57 39.0 4.34e-01 100.0% 89.5%
3925072 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 38.0 4.45e-01 100.0% 100.0%
4990610 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 31.0 3.56e-01 100.0% 75.5%
5047633 10.1.2.183 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.55 39.0 4.37e-01 100.0% 94.3%
5046609 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 38.0 4.26e-01 100.0% 94.3%
3796900 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 33.0 3.50e-01 100.0% 68.9%
3212599 11.1.1.936 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_nematode 0.53 33.0 3.45e-01 100.0% 67.2%
3992318 10.32.1.177 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › UPF0669 0.53 31.0 3.18e-01 100.0% 57.8%
3994329 10.32.1.233 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Hemicentin 0.53 38.0 4.35e-01 99.3% 100.0%
4928383 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 34.0 4.03e-01 98.5% 97.8%
5040234 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 40.0 4.28e-01 100.0% 93.9%
5042965 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 37.0 3.69e-01 100.0% 69.7%
4220410 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.52 37.0 4.26e-01 98.5% 100.0%
3241031 10.32.1.72 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD 0.52 40.0 4.36e-01 100.0% 95.7%
3783891 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.52 36.0 3.93e-01 99.3% 85.2%
3624575 10.32.1.72 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD 0.52 40.0 4.28e-01 100.0% 91.7%
4951746 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 39.0 4.34e-01 97.8% 100.0%
3267022 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 32.0 3.19e-01 100.0% 57.2%
4025604 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.51 36.0 3.90e-01 97.8% 87.3%
3533876 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 39.0 4.22e-01 100.0% 93.9%
3290668 3370.1.1.0 ↗ beta sandwiches › Lactococcin 972 › Lactococcin 972 › Lactococcin 972 0.51 31.0 3.74e-01 98.5% 100.0%
5082908 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 38.0 4.20e-01 100.0% 98.1%
3642389 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.50 36.0 3.98e-01 97.0% 93.3%
3618320 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 36.0 3.97e-01 99.3% 92.6%
5060870 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 37.0 4.17e-01 99.3% 100.0%
D2 medium residues 612-622_708-802
PDB
Domain cluster: rep: collagen_repeat_protein__YP_007354242__Acanthamoeba_polyphaga_moumouvirus__1269028__D685-776