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collagen-like_protein_5
Euk-VirAcanthamoeba_polyphaga_mimivirus
collagen-like_protein_5__YP_003986737__Acanthamoeba_polyphaga_mimivirus__212035
Identity
- Accession:
- YP_003986737 ↗
- Protein ID:
- collagen-like_protein_5
- Kingdom:
- euk
Quality
53.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Mimivirus›
Acanthamoeba_polyphaga_mimivirus
TaxID: 212035
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 585-664_793-812
Domain cluster:
rep: IMGVR_UViG_3300032006_000341-3300032006-Ga0310344_100043046__D91-124_146-207_403-415
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21722.5 best | Gly_rich_2 | 26.6 | 8.10e-06 | 99.0% | 39.3% |
D2
medium
residues 665-792
Domain cluster:
rep: putative_collagenous_domain-containing_protein__YP_003986734__Acanthamoeba_polyphaga_mimivirus__212035__D241-251_315-429
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5gtqA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.50 | 41.0 | 3.23e-01 | 91.4% | 61.6% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 20.0 | 2.68e-01 | 91.4% | 67.2% |