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collagen_repeat_protein

Euk-Vir

Acanthamoeba_polyphaga_moumouvirus

collagen_repeat_protein__YP_007354201__Acanthamoeba_polyphaga_moumouvirus__1269028

Identity

Accession:
YP_007354201 ↗
Protein ID:
collagen_repeat_protein
Kingdom:
euk

Quality

55.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 526-559_580-633_776-787
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21722.5 best Gly_rich_2 27.2 5.30e-06 89.0% 27.7%
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n40P04 2.60.40.2400 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain C 0.68 43.0 4.94e-01 98.0% 87.7%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 45.0 4.33e-01 100.0% 62.4%
1yllA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 48.0 5.00e-01 100.0% 84.8%
3cq9A00 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.62 47.0 3.71e-01 100.0% 39.6%
3sd2A01 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 40.0 4.43e-01 96.0% 85.7%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.60 44.0 4.19e-01 100.0% 65.0%
3ihkA00 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.60 46.0 3.57e-01 100.0% 38.6%
2ii7H00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.60 47.0 4.64e-01 100.0% 79.2%
1y9qA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 43.0 4.49e-01 100.0% 83.9%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.58 41.0 3.79e-01 99.0% 55.6%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 4.12e-01 100.0% 74.5%
3rnsA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 41.0 4.03e-01 100.0% 69.4%
1qwrA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 39.0 4.10e-01 98.0% 78.7%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.57 52.0 4.50e-01 97.0% 97.3%
2vrqA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 44.0 3.99e-01 100.0% 62.1%
4ca9A00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.57 38.0 3.89e-01 100.0% 70.4%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 42.0 3.86e-01 100.0% 58.4%
6m9sD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 41.0 4.11e-01 100.0% 75.2%
3eo6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 39.0 3.83e-01 98.0% 67.0%
1ig3A01 2.60.120.320 Mainly Beta › Sandwich › Jelly Rolls › Thiamin pyrophosphokinase, thiamin-binding domain 0.56 45.0 4.56e-01 99.0% 87.6%
3waiA02 2.60.40.3390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 37.0 3.86e-01 88.0% 73.1%
4mxwD00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 4.40e-01 98.0% 100.0%
6nwmA01 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.54 41.0 3.59e-01 100.0% 52.3%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 4.23e-01 97.0% 89.4%
3d82A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 37.0 3.77e-01 98.0% 70.6%
6accA01 2.60.120.960 Mainly Beta › Sandwich › Jelly Rolls › Spike glycoprotein, N-terminal domain 0.54 47.0 3.50e-01 98.0% 63.3%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 4.26e-01 96.0% 84.7%
3qs2A00 2.60.40.3290 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial protein EcpA 0.54 47.0 4.00e-01 100.0% 98.3%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 4.11e-01 98.0% 84.7%
2jx9A00 2.60.120.740 Mainly Beta › Sandwich › Jelly Rolls › Rhamnose-binding lectin domain (RBL) 0.54 47.0 4.61e-01 100.0% 90.6%
3pijA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 46.0 4.14e-01 100.0% 85.9%
4mloA01 2.60.120.810 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.63e-01 100.0% 54.1%
5jtwA05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.53 40.0 3.79e-01 100.0% 66.9%
6f2sH01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 3.73e-01 100.0% 85.6%
5lz6A00 2.60.120.680 Mainly Beta › Sandwich › Jelly Rolls › GOLD domain 0.53 46.0 4.23e-01 94.0% 79.4%
8a28A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 4.27e-01 100.0% 100.0%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 4.02e-01 97.0% 85.4%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 4.25e-01 99.0% 94.7%
2bi0A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 40.0 3.55e-01 81.0% 83.7%
1tg7A05 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 45.0 3.76e-01 95.0% 65.9%
1uhvA01 2.60.40.1500 Mainly Beta › Sandwich › Immunoglobulin-like › Glycosyl hydrolase domain; family 39 0.53 47.0 4.09e-01 100.0% 70.5%
3zsjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 4.01e-01 95.0% 91.3%
4fffA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 45.0 4.02e-01 100.0% 81.0%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 4.01e-01 99.0% 90.5%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.81e-01 100.0% 79.2%
2vy0B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.38e-01 100.0% 70.0%
3ehkA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 44.0 3.38e-01 100.0% 42.2%
1wltA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 43.0 3.56e-01 100.0% 52.3%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.48e-01 98.0% 74.3%
3vl9B00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.51 45.0 3.53e-01 100.0% 73.3%
2r7eB03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 45.0 3.93e-01 100.0% 94.8%
4i0wD02 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 4.13e-01 100.0% 75.4%
3m5gA02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.50 45.0 3.59e-01 100.0% 65.9%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5008695 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 38.0 3.97e-01 90.0% 61.1%
4028545 929.1.1.0 beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.64 45.0 5.04e-01 100.0% 98.7%
4976718 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.63 40.0 3.46e-01 98.0% 40.0%
3591572 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 46.0 4.33e-01 99.0% 63.3%
3222933 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 40.0 3.96e-01 90.0% 60.0%
4460606 10.32.1.177 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › UPF0669 0.63 43.0 4.24e-01 100.0% 65.5%
4531272 10.32.1.177 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › UPF0669 0.62 43.0 4.12e-01 100.0% 62.6%
4996864 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.61 42.0 3.53e-01 100.0% 41.2%
4026829 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.60 43.0 4.39e-01 100.0% 76.8%
4990612 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.59 44.0 4.28e-01 100.0% 70.9%
5050550 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 51.0 4.84e-01 100.0% 78.3%
5042218 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 51.0 5.24e-01 99.0% 98.9%
2410193 3794.1.2.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.58 43.0 4.70e-01 98.0% 100.0%
3267022 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 43.0 3.83e-01 100.0% 55.2%
4028554 10.30.1.0 beta sandwiches › jelly-roll › Latrophilin 1 gal_lectin domain › Latrophilin 1 gal_lectin domain 0.57 44.0 4.66e-01 97.0% 98.8%
3796900 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 42.0 4.02e-01 100.0% 67.2%
4329714 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 42.0 3.57e-01 99.0% 47.9%
3276836 10.4.1.25 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF26736 0.56 44.0 4.76e-01 91.0% 100.0%
5039646 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 50.0 4.72e-01 98.0% 92.5%
5083851 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 50.0 4.79e-01 99.0% 100.0%
3526370 10.32.1.72 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD 0.55 50.0 4.69e-01 99.0% 95.8%
3411291 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 50.0 4.94e-01 99.0% 99.0%
3514337 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 4.42e-01 99.0% 96.5%
5056893 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 49.0 4.64e-01 100.0% 95.8%
3228364 2006.1.6.33 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_4 0.54 49.0 3.18e-01 100.0% 23.0%
5040234 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 41.0 3.99e-01 100.0% 71.3%
5002193 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 47.0 4.62e-01 96.0% 100.0%
5060870 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 47.0 4.70e-01 96.0% 100.0%
4289744 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 35.0 3.20e-01 88.0% 48.1%
3825274 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.54 47.0 3.99e-01 96.0% 61.2%
3522578 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 37.0 3.82e-01 98.0% 75.8%
5070734 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.54 38.0 3.72e-01 88.0% 67.3%
3540174 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.53 37.0 3.31e-01 88.0% 50.7%
4990610 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 47.0 4.83e-01 100.0% 100.0%
4166998 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 46.0 4.17e-01 94.0% 90.4%
3341432 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.53 46.0 4.06e-01 94.0% 68.3%
4220410 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.53 47.0 4.71e-01 95.0% 100.0%
4004071 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 3.71e-01 100.0% 58.6%
3642389 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.53 45.0 4.51e-01 93.0% 93.3%
3677263 11.1.4.101 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7771 0.53 40.0 3.84e-01 87.0% 69.2%
4103741 10.32.1.19 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.53 46.0 4.62e-01 100.0% 100.0%
3214876 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 47.0 4.75e-01 99.0% 99.0%
3402726 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 46.0 3.70e-01 100.0% 90.0%
4960907 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 45.0 4.56e-01 95.0% 96.0%
4136414 10.32.1.8 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.52 46.0 3.98e-01 99.0% 93.1%
3245739 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 45.0 3.82e-01 98.0% 80.6%
3903851 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.52e-01 100.0% 54.2%
5033918 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.52 43.0 3.52e-01 89.0% 81.7%
3452318 11.1.4.101 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7771 0.52 41.0 3.58e-01 88.0% 66.9%
4951746 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 46.0 4.53e-01 98.0% 100.0%
3290668 3370.1.1.0 beta sandwiches › Lactococcin 972 › Lactococcin 972 › Lactococcin 972 0.51 38.0 4.12e-01 95.0% 100.0%
3618320 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 45.0 4.47e-01 99.0% 94.4%
3992318 10.32.1.177 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › UPF0669 0.51 46.0 4.17e-01 100.0% 74.8%
3245210 10.32.1.213 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.51 44.0 4.05e-01 94.0% 80.8%
3927635 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 45.0 3.64e-01 100.0% 79.0%
3434526 11.1.4.101 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7771 0.51 41.0 3.61e-01 88.0% 66.7%
4955989 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 44.0 4.49e-01 95.0% 100.0%
4942547 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 45.0 3.69e-01 100.0% 83.2%
4408833 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 43.0 4.32e-01 95.0% 96.1%