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collagen_repeat_protein
Euk-VirAcanthamoeba_polyphaga_moumouvirus
collagen_repeat_protein__YP_007354240__Acanthamoeba_polyphaga_moumouvirus__1269028
Identity
- Accession:
- YP_007354240 ↗
- Protein ID:
- collagen_repeat_protein
- Kingdom:
- euk
Quality
70.8
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Moumouvirus›
Acanthamoeba_polyphaga_moumouvirus
TaxID: 1269028
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 152-387
Domain cluster:
rep: MN698239.1__QGZ17699.1__HTVC023P_gp70__00070__D48-308
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21722.5 best | Gly_rich_2 | 53.2 | 6.00e-14 | 96.6% | 99.1% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8shiI01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 23.0 | 3.27e-01 | 78.4% | 76.9% |
| 5lz6A00 | 2.60.120.680 | Mainly Beta › Sandwich › Jelly Rolls › GOLD domain | 0.51 | 23.0 | 3.15e-01 | 97.9% | 79.4% |
| 1xf1A03 | 2.60.40.1710 | Mainly Beta › Sandwich › Immunoglobulin-like › Subtilisin-like superfamily | 0.50 | 25.0 | 3.28e-01 | 98.3% | 84.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4028545 | 929.1.1.0 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin | 0.67 | 23.0 | 4.08e-01 | 100.0% | 97.3% |
| 4948691 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 25.0 | 3.93e-01 | 100.0% | 99.0% |
| 3642389 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.57 | 21.0 | 3.11e-01 | 100.0% | 74.3% |
| 4010301 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 30.0 | 3.59e-01 | 99.2% | 76.2% |
| 3290668 | 3370.1.1.0 ↗ | beta sandwiches › Lactococcin 972 › Lactococcin 972 › Lactococcin 972 | 0.54 | 21.0 | 3.42e-01 | 98.7% | 100.0% |
| 3241031 | 10.32.1.72 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD | 0.54 | 26.0 | 3.80e-01 | 100.0% | 96.5% |
| 4103741 | 10.32.1.19 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC | 0.53 | 25.0 | 3.66e-01 | 99.2% | 100.0% |
| 4951746 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 24.0 | 3.70e-01 | 98.3% | 100.0% |
| 4928383 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 22.0 | 3.36e-01 | 95.3% | 100.0% |
| 4958880 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 23.0 | 3.31e-01 | 95.3% | 96.8% |