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collagen_repeat_protein

Euk-Vir

Acanthamoeba_polyphaga_moumouvirus

collagen_repeat_protein__YP_007354242__Acanthamoeba_polyphaga_moumouvirus__1269028

Identity

Accession:
YP_007354242 ↗
Protein ID:
collagen_repeat_protein
Kingdom:
euk

Quality

55.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Moumouvirus› Acanthamoeba_polyphaga_moumouvirus

TaxID: 1269028

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 558-684_777-791
PDB
Domain cluster: rep: KM199771.1__AIK68527.1__Lo5R7ANS_57__00057__D358-488_526-544
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21722.5 best Gly_rich_2 44.8 2.20e-11 95.8% 57.6%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ca9A00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.62 31.0 3.66e-01 100.0% 68.4%
5cadA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 33.0 2.96e-01 100.0% 40.4%
6m9sD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 31.0 3.59e-01 100.0% 71.3%
1g0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 4.15e-01 98.6% 87.3%
7uzsX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 4.15e-01 100.0% 87.0%
1t16A00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.53 47.0 3.36e-01 97.2% 97.0%
5dl7A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 44.0 3.20e-01 89.4% 41.5%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 31.0 3.37e-01 99.3% 69.2%
5dl5A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.52 43.0 3.11e-01 89.4% 35.6%
1l9nA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.84e-01 100.0% 86.0%
5lz6A00 2.60.120.680 Mainly Beta › Sandwich › Jelly Rolls › GOLD domain 0.51 35.0 3.78e-01 97.2% 79.4%
6qdiA02 3.90.182.10 Alpha Beta › Alpha-Beta Complex › Toxin - Anthrax Protective Antigen; domain 1 › Toxin - Anthrax Protective Antigen;domain 1 0.51 36.0 3.72e-01 97.2% 75.9%
4h3wA01 2.60.290.20 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › Protein of unknown function (DUF4621), C-terminal domain 0.51 33.0 3.54e-01 100.0% 75.2%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.51 39.0 3.90e-01 100.0% 79.2%
1wltA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 32.0 3.02e-01 100.0% 51.7%
6qe7A01 3.90.182.10 Alpha Beta › Alpha-Beta Complex › Toxin - Anthrax Protective Antigen; domain 1 › Toxin - Anthrax Protective Antigen;domain 1 0.50 35.0 3.66e-01 97.9% 75.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928383 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 33.0 4.14e-01 100.0% 75.6%
5053030 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.59 33.0 4.25e-01 100.0% 97.5%
5045833 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 33.0 3.71e-01 100.0% 74.3%
3276836 10.4.1.25 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF26736 0.57 34.0 4.32e-01 95.8% 100.0%
4948954 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 35.0 3.83e-01 93.0% 73.9%
5069600 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 34.0 3.93e-01 99.3% 84.0%
5024850 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 33.0 3.88e-01 99.3% 83.0%
4960906 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 35.0 4.17e-01 100.0% 92.0%
3895339 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 4.14e-01 100.0% 86.1%
3526430 11.1.1.1031 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF25992, PF27919 0.54 35.0 2.91e-01 99.3% 37.6%
4944748 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 36.0 3.86e-01 100.0% 80.0%
3274604 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 4.02e-01 100.0% 87.8%
3622115 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.53 36.0 3.46e-01 96.5% 60.6%
3259180 10.4.1.25 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF26736 0.52 31.0 3.86e-01 98.6% 100.0%
3981154 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.51 43.0 3.02e-01 89.4% 29.7%
1568816 5084.1.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg 0.51 44.0 3.60e-01 94.4% 99.6%
3928463 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 36.0 4.11e-01 100.0% 99.0%
5012405 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 36.0 3.48e-01 92.3% 64.4%
3978758 10.4.1.42 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › Ig_GpJ_C 0.50 42.0 4.36e-01 100.0% 98.5%
5043348 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 36.0 3.42e-01 100.0% 61.8%
4955021 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 32.0 3.52e-01 97.9% 79.1%
D2 medium residues 685-776
PDB
Domain cluster: representative