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collagen_triple_helix_repeat_protein

Euk-Vir

Pithovirus_sibericum

collagen_triple_helix_repeat_protein__YP_009001021__Pithovirus_sibericum__1450746

Identity

Accession:
YP_009001021 ↗
Protein ID:
collagen_triple_helix_repeat_protein
Kingdom:
euk

Quality

35.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Pithoviridae› Alphapithovirus› Pithovirus_sibericum

TaxID: 1450746

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 582-649
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.76 48.0 4.12e-01 86.8% 42.7%
3a11B01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.64 46.0 3.76e-01 83.8% 40.8%
3wa8B00 1.10.520.40 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 0.64 40.0 3.04e-01 85.3% 24.6%
4qqwA01 1.10.3210.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.64 51.0 3.52e-01 89.7% 30.1%
4azsA03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 44.0 3.50e-01 79.4% 50.0%
3hjeA03 1.10.150.200 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 0.59 38.0 3.47e-01 75.0% 48.4%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.59 40.0 3.55e-01 72.1% 93.1%
2da4A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 38.0 3.86e-01 85.3% 68.2%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.58 39.0 3.72e-01 79.4% 57.8%
2yviA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.57 42.0 3.89e-01 79.4% 75.3%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 44.0 4.27e-01 86.8% 93.4%
8jpdG01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.54 42.0 3.43e-01 89.7% 81.4%
1iv8A03 1.10.150.200 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 0.54 33.0 3.09e-01 82.4% 48.2%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 30.0 3.22e-01 77.9% 64.3%
1hkqA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.03e-01 73.5% 39.2%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 34.0 3.48e-01 76.5% 66.2%
1le8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 30.0 3.34e-01 83.8% 69.8%
7y11B01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.52 34.0 3.54e-01 73.5% 73.0%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.26e-01 73.5% 90.0%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.34e-01 80.9% 100.0%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.50e-01 76.5% 72.4%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3673342 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 37.0 3.77e-01 82.4% 52.3%
3243454 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 36.0 3.79e-01 70.6% 55.0%
3337773 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 37.0 3.47e-01 82.4% 43.8%
3240015 148.1.3.42 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.65 35.0 3.65e-01 82.4% 55.4%
3243495 101.1.1.289 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.64 37.0 4.06e-01 83.8% 70.9%
3911740 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.63 36.0 3.98e-01 85.3% 69.1%
3969984 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 41.0 4.26e-01 73.5% 72.3%
3934918 1075.1.1.4 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 0.62 50.0 3.32e-01 91.2% 31.4%
3243138 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.61 32.0 3.44e-01 76.5% 58.3%
3231899 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 37.0 3.68e-01 77.9% 58.6%
4890941 3187.1.1.20 ↗ alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › AAA_9 0.61 36.0 3.00e-01 70.6% 33.3%
3341094 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.60 34.0 3.48e-01 77.9% 56.9%
3802428 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.60 34.0 3.25e-01 83.8% 46.8%
4972388 101.1.2.949 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28863 0.59 44.0 3.18e-01 80.9% 60.8%
4171508 109.4.1.117 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG,SCD 0.57 43.0 2.67e-01 80.9% 38.7%
4404513 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.56 32.0 3.18e-01 72.1% 50.7%
3835699 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.54 43.0 3.44e-01 91.2% 96.0%
3997838 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.54 35.0 3.64e-01 91.2% 69.2%
4527478 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 42.0 3.54e-01 88.2% 74.0%
3169918 148.1.3.173 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.53 34.0 3.34e-01 76.5% 60.0%
3812840 3788.1.1.0 ↗ alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) 0.53 37.0 3.70e-01 82.4% 72.9%
5046294 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.52 31.0 3.38e-01 89.7% 70.9%
3278040 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 37.0 3.93e-01 75.0% 93.3%
3404380 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.52 34.0 3.39e-01 77.9% 64.3%
3458051 109.4.1.1280 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long 0.52 40.0 3.00e-01 83.8% 42.4%
4939640 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.51 32.0 3.39e-01 89.7% 73.3%
3333472 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.50 33.0 3.21e-01 75.0% 58.7%
4275568 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.50 35.0 3.52e-01 88.2% 72.9%
D2 high residues 658-708
PDB