←Back to structures
conserved_HNHhoming_endonuclease
Euk-VirMelbournevirus
conserved_HNHhoming_endonuclease__YP_009094846__Melbournevirus__1560514
Identity
- Accession:
- YP_009094846 ↗
- Protein ID:
- conserved_HNHhoming_endonuclease
- Kingdom:
- euk
Quality
77.3
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Marseillevirus›
Marseillevirus_sp._'Melbournevirus'
TaxID: 1560514
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-86
Domain cluster:
rep: OP056089.1__UYD72102.1__X__00002__D5-102
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.92 | 87.0 | 7.64e-01 | 100.0% | 84.0% |
| 2w5qA01 | 3.30.1120.170 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.61 | 36.0 | 3.44e-01 | 70.1% | 47.3% |
| 1a73A00 | 3.90.75.10 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A | 0.61 | 52.0 | 4.11e-01 | 96.1% | 67.9% |
| 2pmzA09 | 6.20.50.80 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.54 | 29.0 | 3.34e-01 | 71.4% | 73.1% |
| 4a4yA01 | 2.60.200.50 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.53 | 47.0 | 4.35e-01 | 97.4% | 75.5% |
| 8ornD01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.51 | 44.0 | 3.45e-01 | 100.0% | 49.4% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3586841 | 378.1.1.7 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 | 0.91 | 84.0 | 7.22e-01 | 98.7% | 87.8% |
| 3539740 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.71 | 56.0 | 4.72e-01 | 84.4% | 65.6% |
| 89916 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.61 | 52.0 | 4.15e-01 | 96.1% | 67.9% |
| 3809935 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.54 | 39.0 | 2.50e-01 | 76.6% | 27.8% |
| 3800183 | 7579.1.1.81 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Arb2 | 0.54 | 45.0 | 3.16e-01 | 97.4% | 46.1% |
| 4159320 | 3111.1.1.2 ↗ | beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3_PglB_C | 0.51 | 35.0 | 3.47e-01 | 98.7% | 67.1% |
D2
high
residues 267-367
Domain cluster:
rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07463.17 best | NUMOD4 | 29.4 | 1.00e-06 | 38.6% | 44.9% |
D3
high
residues 436-528
Domain cluster:
rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13392.13 best | HNH_3 | 36.5 | 4.10e-09 | 50.5% | 93.5% |
D4
medium
residues 92-153
Domain cluster:
rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_10000072181__D164-213
D5
medium
residues 163-257
Domain cluster:
rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13392.13 best | HNH_3 | 43.7 | 2.30e-11 | 49.5% | 97.8% |
D6
medium
residues 381-423
Domain cluster:
rep: OP172807.1__WAX16177.1__EH802P2_00072__00071__D76-121