conserved_XRN1_5-3_exoribonuclease

Euk-Vir

Melbournevirus

conserved_XRN1_5-3_exoribonuclease__YP_009094786__Melbournevirus__1560514

Identity

74.8 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Marseillevirus_sp._'Melbournevirus'

TaxID: 1560514

View cluster (15 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-205

PDB

Domain cluster: rep: Hypothetical_protein_SPPV_50__NP_659626__Sheeppox_virus__10266__D1-82_143-236

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03159.25 best	XRN_N	56.9	2.90e-15	52.2%	32.8%
PF03159.25	XRN_N	58.4	1.00e-15	50.0%	38.6%

D2 high residues 266-396

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17846.7 best	XRN_M	38.6	9.90e-10	96.2%	18.8%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3mfnB00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.51	35.0	3.57e-01	100.0%	72.2%
3t8vA05	1.25.50.10	Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain	0.50	41.0	3.09e-01	88.5%	80.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5039177	1076.1.1.4 ↗	alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › PrsW-protease	0.54	42.0	3.45e-01	80.2%	70.6%

D3 high residues 413-487

PDB

D4 medium residues 1-25_206-265

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6pcoC00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	37.0	3.24e-01	70.6%	94.7%
2fbhA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	39.0	3.44e-01	78.8%	93.4%
4gdnC00	3.40.710.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily	0.54	44.0	3.12e-01	97.6%	57.1%
5e1wA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	40.0	3.25e-01	83.5%	76.2%
3hp7A02	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.52	40.0	3.11e-01	87.1%	98.6%
3dhuA01	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.51	40.0	2.79e-01	90.6%	78.7%
3e6mA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	38.0	3.27e-01	82.4%	85.6%
6lcjD01	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.50	39.0	2.78e-01	87.1%	94.2%
2zxqA02	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.50	40.0	2.85e-01	90.6%	76.0%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3724779	101.1.2.236 ↗	alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD	0.53	37.0	2.97e-01	72.9%	98.8%
3718248	101.1.9.30 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N	0.53	32.0	3.18e-01	71.8%	56.7%
4649222	101.1.2.15 ↗	alpha arrays › HTH › HTH › winged helix domain › MarR	0.52	39.0	3.43e-01	81.2%	92.3%
3943466	101.1.2.15 ↗	alpha arrays › HTH › HTH › winged helix domain › MarR	0.51	38.0	3.18e-01	82.4%	78.8%
3830291	207.1.1.95 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14	0.51	41.0	2.78e-01	95.3%	51.6%
3629945	376.1.1.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4	0.51	36.0	3.27e-01	74.1%	73.9%
4973555	101.1.2.48 ↗	alpha arrays › HTH › HTH › winged helix domain › PadR	0.50	39.0	3.14e-01	88.2%	42.4%