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conserved_cell_nuclear_antigen

Euk-Vir

Melbournevirus

conserved_cell_nuclear_antigen__YP_009094691__Melbournevirus__1560514

Identity

Accession:
YP_009094691 ↗
Protein ID:
conserved_cell_nuclear_antigen
Kingdom:
euk

Quality

84.3 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Marseillevirus_sp._'Melbournevirus'

TaxID: 1560514

Cluster

View cluster (140 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-133
PDB
Domain cluster: rep: IMGVR_UViG_3300033990_000272-3300033990-Ga0373184_0008483_4516_5451__D198-306
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00705.24 best PCNA_N 24.9 2.00e-05 98.5% 70.1%
D2 high residues 147-272
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.83 74.0 5.67e-01 92.1% 47.4%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.83 72.0 5.59e-01 92.1% 46.5%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 73.0 7.29e-01 92.1% 95.3%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.81 72.0 5.62e-01 92.9% 48.8%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.81 71.0 5.61e-01 92.1% 49.6%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.81 71.0 5.58e-01 92.9% 48.2%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.80 70.0 5.50e-01 91.3% 49.2%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.80 66.0 5.38e-01 88.1% 49.3%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.80 70.0 5.40e-01 92.1% 46.9%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 69.0 6.98e-01 90.5% 96.0%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.79 70.0 5.32e-01 94.4% 43.5%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.79 70.0 5.46e-01 92.9% 48.0%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 68.0 5.24e-01 91.3% 47.9%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 67.0 5.22e-01 91.3% 48.2%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 67.0 6.95e-01 92.9% 96.6%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 67.0 5.24e-01 91.3% 47.8%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 67.0 5.68e-01 92.9% 59.3%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 67.0 6.67e-01 92.9% 93.9%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 66.0 6.53e-01 92.9% 93.8%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 65.0 6.60e-01 92.9% 96.0%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.73 62.0 6.28e-01 91.3% 91.1%
1tdqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 27.0 3.10e-01 70.6% 51.1%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.62 33.0 4.01e-01 90.5% 81.6%
2akjA01 3.90.480.20 Alpha Beta › Alpha-Beta Complex › Sulfite Reductase Hemoprotein; domain 2 › 0.56 46.0 3.82e-01 88.1% 58.0%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 28.0 3.34e-01 73.0% 73.3%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 23.0 3.21e-01 89.7% 84.2%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.51 40.0 4.18e-01 92.1% 89.0%
ECOD (92)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4372908 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.85 73.0 7.42e-01 92.1% 90.4%
4030418 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.84 74.0 7.12e-01 91.3% 93.6%
1290662 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.84 74.0 7.06e-01 92.1% 86.0%
3292092 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 76.0 7.41e-01 94.4% 95.5%
4026069 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 73.0 7.15e-01 91.3% 91.1%
3598259 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.83 73.0 7.13e-01 92.1% 94.8%
5027067 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 72.0 7.39e-01 90.5% 98.3%
5043507 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 72.0 7.36e-01 90.5% 98.3%
4936050 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 73.0 7.33e-01 92.1% 95.2%
3725759 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.82 72.0 6.46e-01 92.9% 95.9%
2392831 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 72.0 7.24e-01 92.1% 93.7%
4013292 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.82 72.0 7.03e-01 92.1% 93.3%
3351103 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 73.0 7.09e-01 92.9% 88.9%
4055466 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 73.0 7.45e-01 94.4% 96.8%
3406312 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.81 73.0 7.47e-01 94.4% 98.4%
2805173 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 72.0 7.23e-01 92.9% 94.4%
3558235 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.81 71.0 6.95e-01 92.1% 94.1%
3743106 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.81 70.0 6.68e-01 91.3% 95.2%
138072 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 73.0 7.26e-01 94.4% 93.9%
4991675 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 73.0 7.37e-01 94.4% 96.0%
5052551 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 73.0 7.35e-01 94.4% 95.2%
3397928 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.81 71.0 7.14e-01 92.1% 98.4%
3997015 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.81 70.0 6.94e-01 90.5% 92.3%
4983064 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 73.0 7.39e-01 94.4% 96.8%
3387590 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.81 67.0 6.98e-01 94.4% 94.8%
167574 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 71.0 7.07e-01 92.9% 90.1%
4456195 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.81 72.0 7.42e-01 94.4% 98.3%
3738030 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.80 70.0 6.85e-01 91.3% 91.9%
4660283 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 73.0 7.33e-01 94.4% 96.8%
3499821 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.80 70.0 6.98e-01 92.1% 94.6%
3782606 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.80 71.0 6.76e-01 92.9% 89.7%
4026073 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.80 70.0 7.04e-01 91.3% 100.0%
5056758 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 68.0 7.12e-01 89.7% 96.5%
4948360 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 70.0 6.94e-01 90.5% 88.4%
4956740 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 72.0 7.31e-01 94.4% 96.8%
4038410 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.80 69.0 6.69e-01 91.3% 95.0%
5033948 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 72.0 7.17e-01 94.4% 91.5%
4646871 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 72.0 7.32e-01 94.4% 95.2%
5010672 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 72.0 7.40e-01 94.4% 99.2%
4232371 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 72.0 7.43e-01 94.4% 99.2%
3596476 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.80 69.0 6.62e-01 91.3% 95.8%
3551142 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.80 70.0 6.63e-01 92.1% 85.5%
3936914 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 72.0 7.13e-01 94.4% 94.6%
5037345 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 72.0 7.11e-01 95.2% 94.0%
3230925 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.80 72.0 7.12e-01 94.4% 94.6%
5028024 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 72.0 7.12e-01 94.4% 92.3%
4998585 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 70.0 7.18e-01 94.4% 96.7%
4939066 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 71.0 7.11e-01 94.4% 94.6%
4943405 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 70.0 7.03e-01 92.1% 96.0%
4426056 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.79 70.0 6.46e-01 92.9% 85.8%
5047575 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 69.0 7.00e-01 92.1% 94.4%
309454 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.79 71.0 7.01e-01 94.4% 90.9%
3520418 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 69.0 6.46e-01 92.1% 93.3%
3251045 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 71.0 6.61e-01 95.2% 79.2%
5991 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 70.0 7.14e-01 92.9% 95.9%
3507499 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.79 68.0 6.69e-01 91.3% 97.8%
3407530 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.79 68.0 6.69e-01 91.3% 94.8%
4517015 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 71.0 7.17e-01 94.4% 96.0%
5052550 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 69.0 6.99e-01 92.9% 97.6%
4995027 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.79 67.0 6.80e-01 91.3% 90.4%
5037314 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.79 68.0 6.95e-01 90.5% 96.7%
3719897 227.1.1.18 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C 0.79 66.0 6.71e-01 88.9% 92.8%
5060716 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 71.0 7.07e-01 95.2% 96.2%
3624708 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.78 71.0 6.94e-01 95.2% 91.9%
5039027 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 70.0 7.20e-01 95.2% 98.3%
3719938 227.1.1.17 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N 0.78 69.0 6.66e-01 92.9% 93.6%
5000468 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 70.0 7.09e-01 94.4% 98.4%
3407531 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.78 69.0 6.75e-01 92.9% 90.4%
5039026 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 65.0 6.72e-01 92.9% 91.7%
4212381 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 71.0 6.94e-01 95.2% 91.1%
3256903 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.78 69.0 6.71e-01 92.9% 93.3%
3613685 227.1.1.17 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N 0.78 69.0 6.61e-01 92.9% 93.6%
3256386 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.78 68.0 6.70e-01 92.9% 97.0%
3932751 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.77 66.0 6.61e-01 90.5% 93.1%
4142781 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 67.0 6.79e-01 92.9% 94.4%
143269 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 67.0 6.73e-01 92.1% 92.8%
5000467 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 67.0 6.55e-01 92.9% 97.0%
4956739 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 67.0 6.78e-01 92.9% 94.4%
3022412 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.76 66.0 6.36e-01 92.1% 90.1%
1871497 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.76 64.0 6.60e-01 92.9% 94.1%
3244230 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.76 66.0 6.20e-01 92.1% 92.0%
4360456 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.76 67.0 6.63e-01 92.9% 90.8%
5990 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 66.0 6.72e-01 93.7% 94.3%
3256904 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.76 66.0 6.65e-01 92.1% 96.8%
2392830 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 66.0 6.57e-01 92.9% 90.8%
4096140 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 66.0 6.64e-01 92.1% 94.4%
3507498 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.75 65.0 6.14e-01 92.1% 91.3%
4936049 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 65.0 6.70e-01 93.7% 95.8%
4599875 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 65.0 6.65e-01 93.7% 95.0%
3193266 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.75 65.0 6.20e-01 92.1% 93.1%
4980359 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 64.0 6.55e-01 92.1% 94.2%
5059299 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.74 64.0 6.61e-01 93.7% 95.8%