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conserved_putative_MutH_Vsr_archaeal_HJR-like_endonuclease

Euk-Vir

Melbournevirus

conserved_putative_MutH_Vsr_archaeal_HJR-like_endonuclease__YP_009094724__Melbournevirus__1560514

Identity

Accession:: YP_009094724 ↗
Protein ID:: conserved_putative_MutH_Vsr_archaeal_HJR-like_endonuclease
Kingdom:: euk

Quality

79.1 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Marseillevirus_sp._'Melbournevirus'

TaxID: 1560514

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-88

PDB

Domain cluster: rep: NC_031022.1__YP_009280252.1__BI056_gp065__00065__D70-126

D2 high residues 267-390

PDB

Domain cluster: rep: IMGVR_UViG_3300025584_000284-3300025584-Ga0209774_100031726__D151-252

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24308.2 best	DUF7487	126.6	1.80e-36	86.3%	45.5%

D3 medium residues 94-167

PDB

Domain cluster: rep: putative_MutH_Vsr_archaeal_HJR-like_endonuclease__YP_009506936__Tunisvirus_fontaine2__1421067__D1-87

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3oh8A01	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.59	46.0	3.77e-01	85.1%	65.7%
1gqyB02	3.40.1190.10	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain	0.56	40.0	2.97e-01	78.4%	36.9%
2g30A02	3.30.310.10	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein	0.54	40.0	3.53e-01	81.1%	57.8%
2wtzA02	3.40.1190.10	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain	0.54	39.0	2.83e-01	79.7%	33.3%
3h74A00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.52	37.0	2.63e-01	78.4%	95.7%
2bwnB01	3.90.1150.10	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1	0.52	36.0	2.85e-01	73.0%	52.8%
4q66D01	6.20.120.50	Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.51	36.0	3.64e-01	86.5%	75.3%
3zl8A02	3.40.1190.10	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain	0.51	36.0	2.67e-01	77.0%	33.6%
3udfA03	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.51	36.0	3.35e-01	75.7%	91.6%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5081654	211.1.1.0 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	0.83	64.0	7.00e-01	95.9%	100.0%
3712575	331.9.1.2 ↗	a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C	0.58	44.0	3.73e-01	81.1%	56.5%
5080723	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.58	42.0	3.37e-01	78.4%	94.2%
4672063	2.1.1.48 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C	0.57	39.0	4.34e-01	71.6%	94.8%
4195627	4.6.1.6 ↗	beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM	0.57	42.0	4.40e-01	78.4%	100.0%
3723441	7502.1.1.7 ↗	a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon2	0.55	42.0	3.67e-01	83.8%	68.3%
5046839	1.1.2.0 ↗	beta barrels › cradle loop barrel › RIFT-related › double psi	0.55	39.0	3.41e-01	77.0%	98.3%
3973892	3994.1.1.2 ↗	a+b two layers › C-P lyase subunit PhnG › C-P lyase subunit PhnG › C-P lyase subunit PhnG › PhnG	0.54	39.0	3.48e-01	78.4%	54.8%
5061404	219.1.1.0 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases	0.54	46.0	3.14e-01	100.0%	72.1%
3964935	243.4.1.1 ↗	a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DsbC_N	0.52	35.0	3.73e-01	70.3%	84.6%
3733286	2003.1.2.16 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8	0.51	41.0	2.79e-01	89.2%	96.3%

D4 medium residues 181-257

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF24308.2 best	DUF7487	46.9	4.20e-12	100.0%	35.0%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3nrkA01	1.10.4030.10	Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain	0.56	40.0	3.10e-01	85.7%	30.2%