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conserved_putative_RING_finger_E3ubiquitin_ligase
Euk-VirMelbournevirus
conserved_putative_RING_finger_E3ubiquitin_ligase__YP_009094685__Melbournevirus__1560514
Identity
- Accession:
- YP_009094685 ↗
- Protein ID:
- conserved_putative_RING_finger_E3ubiquitin_ligase
- Kingdom:
- euk
Quality
76.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Marseillevirus›
Marseillevirus_sp._'Melbournevirus'
TaxID: 1560514
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 36-123
Domain cluster:
representative
Pfam (5)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13920.13 best | zf-C3HC4_3 | 28.4 | 1.60e-06 | 55.7% | 93.9% |
| PF14634.13 | zf-RING_5 | 28.8 | 1.40e-06 | 46.6% | 100.0% |
| PF13639.13 | zf-RING_2 | 35.4 | 1.40e-08 | 46.6% | 97.7% |
| PF00097.32 | zf-C3HC4 | 25.9 | 9.70e-06 | 43.2% | 100.0% |
| PF17123.12 | zf-RING_11 | 32.8 | 6.30e-08 | 31.8% | 100.0% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8eb0A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.75 | 54.0 | 5.47e-01 | 75.0% | 97.7% |
| 2co8A00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.57 | 39.0 | 4.09e-01 | 78.4% | 76.8% |
| 2ysmA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 37.0 | 3.44e-01 | 73.9% | 78.4% |
| 4euoA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 41.0 | 3.22e-01 | 87.5% | 87.4% |
| 2d8yA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.51 | 39.0 | 4.25e-01 | 100.0% | 98.6% |
| 3t7lA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.50 | 33.0 | 3.59e-01 | 78.4% | 79.7% |
| 7po9A01 | 3.40.1800.20 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › | 0.50 | 36.0 | 3.67e-01 | 75.0% | 84.9% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3598301 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.77 | 53.0 | 5.32e-01 | 70.5% | 85.6% |
| 3723227 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.76 | 53.0 | 5.57e-01 | 72.7% | 95.0% |
| 3876888 | 376.1.1.102 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26191 | 0.75 | 53.0 | 4.79e-01 | 72.7% | 69.6% |
| 3263160 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.73 | 51.0 | 4.84e-01 | 72.7% | 78.1% |
| 3249848 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.72 | 53.0 | 5.39e-01 | 76.1% | 97.6% |
| 3573660 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.72 | 49.0 | 5.02e-01 | 70.5% | 91.8% |
| 4011231 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.72 | 51.0 | 5.39e-01 | 73.9% | 97.5% |
| 3457383 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.71 | 53.0 | 5.34e-01 | 77.3% | 93.3% |
| 3692487 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.71 | 52.0 | 5.02e-01 | 76.1% | 81.0% |
| 3544996 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.71 | 34.0 | 3.95e-01 | 71.6% | 61.5% |
| 3368659 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.71 | 51.0 | 5.38e-01 | 75.0% | 98.8% |
| 3743721 | 376.1.1.93 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SIP5_N | 0.69 | 50.0 | 4.55e-01 | 75.0% | 86.1% |
| 3569440 | 376.1.1.29 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 | 0.65 | 41.0 | 4.16e-01 | 71.6% | 63.3% |
| 3736484 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.57 | 41.0 | 4.00e-01 | 73.9% | 80.0% |
| 3420754 | 376.1.3.11 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H_2 | 0.57 | 37.0 | 3.57e-01 | 85.2% | 59.0% |
| 3796618 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.55 | 36.0 | 3.83e-01 | 76.1% | 75.0% |
| 3563021 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.53 | 37.0 | 4.08e-01 | 72.7% | 90.0% |
| 3706927 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.53 | 34.0 | 3.99e-01 | 71.6% | 96.7% |
| 3531315 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.51 | 35.0 | 3.94e-01 | 72.7% | 90.0% |