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conserved_putative_nuclease
Euk-VirMelbournevirus
conserved_putative_nuclease__YP_009094829__Melbournevirus__1560514
Identity
- Accession:
- YP_009094829 ↗
- Protein ID:
- conserved_putative_nuclease
- Kingdom:
- euk
Quality
74.5
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Marseillevirus›
Marseillevirus_sp._'Melbournevirus'
TaxID: 1560514
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-157
Domain cluster:
rep: OP172755.1__WAX11389.1__CB473P1_00102__00102__D3-159
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03235.20 best | GmrSD_N | 55.4 | 1.30e-14 | 99.3% | 44.5% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xw3A01 | 3.90.1530.10 | Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain | 0.71 | 45.0 | 5.25e-01 | 94.1% | 89.6% |
| 1vk1A01 | 3.90.1530.10 | Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain | 0.71 | 42.0 | 4.81e-01 | 97.0% | 78.4% |
| 1vz0A01 | 3.90.1530.30 | Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › | 0.69 | 33.0 | 4.56e-01 | 72.6% | 95.2% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081788 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.87 | 64.0 | 7.09e-01 | 97.8% | 91.8% |
| 5030163 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.87 | 67.0 | 7.41e-01 | 99.3% | 96.4% |
| 5018770 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.86 | 65.0 | 6.81e-01 | 100.0% | 84.8% |
| 4964225 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.84 | 79.0 | 7.63e-01 | 97.8% | 95.3% |
| 3945776 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.81 | 52.0 | 6.17e-01 | 97.8% | 92.6% |
| 5032171 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.79 | 49.0 | 6.10e-01 | 97.8% | 98.8% |
| 5052345 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.79 | 49.0 | 5.91e-01 | 98.5% | 94.4% |
| 4928673 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.78 | 45.0 | 5.68e-01 | 90.4% | 96.2% |
| 2841795 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.77 | 48.0 | 5.74e-01 | 94.8% | 92.2% |
| 2543651 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.76 | 46.0 | 5.59e-01 | 95.6% | 92.1% |
| 4927766 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.76 | 41.0 | 5.10e-01 | 86.7% | 84.7% |
| 4946472 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.76 | 43.0 | 5.41e-01 | 88.1% | 93.8% |
| 3587492 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.75 | 44.0 | 5.02e-01 | 91.1% | 78.0% |
| 3602315 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.75 | 62.0 | 5.60e-01 | 86.7% | 97.7% |
| 3948471 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.74 | 52.0 | 5.58e-01 | 100.0% | 83.5% |
| 4370861 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.74 | 51.0 | 5.53e-01 | 100.0% | 85.5% |
| 4931651 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.73 | 43.0 | 5.02e-01 | 92.6% | 82.1% |
| 3988408 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.73 | 41.0 | 5.35e-01 | 91.9% | 98.7% |
| 4974679 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.73 | 42.0 | 4.70e-01 | 92.6% | 73.1% |
| 4964030 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.72 | 43.0 | 4.60e-01 | 93.3% | 66.7% |
| 2061501 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.71 | 43.0 | 4.91e-01 | 96.3% | 81.8% |
| 5069965 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.70 | 45.0 | 4.70e-01 | 93.3% | 69.6% |
| 3602844 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.68 | 42.0 | 4.42e-01 | 93.3% | 68.3% |
| 5073795 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.62 | 52.0 | 5.42e-01 | 97.0% | 96.0% |
| 3283211 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.54 | 42.0 | 4.14e-01 | 90.4% | 77.1% |
| 4947338 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.52 | 48.0 | 4.24e-01 | 99.3% | 86.3% |
D2
medium
residues 163-310
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qguA02 | 1.10.10.640 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › phospholipid-binding protein | 0.67 | 36.0 | 4.81e-01 | 91.9% | 100.0% |
| 4p17A02 | 1.10.8.270 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains | 0.64 | 38.0 | 4.40e-01 | 77.7% | 80.0% |
| 4ae4A00 | 1.20.120.1920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UBAP1 SOUBA domain | 0.63 | 41.0 | 4.58e-01 | 98.6% | 85.1% |
| 4hl4A01 | 1.10.8.1310 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.61 | 36.0 | 3.64e-01 | 71.6% | 56.8% |
| 4akgA06 | 1.10.8.710 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain | 0.60 | 41.0 | 4.73e-01 | 91.9% | 96.3% |
| 4fp4A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 45.0 | 3.83e-01 | 98.0% | 81.9% |