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conserved_putative_restriction_endonuclease

Euk-Vir

Melbournevirus

conserved_putative_restriction_endonuclease__YP_009094866__Melbournevirus__1560514

Identity

Accession:: YP_009094866 ↗
Protein ID:: conserved_putative_restriction_endonuclease
Kingdom:: euk

Quality

87.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Marseillevirus_sp._'Melbournevirus'

TaxID: 1560514

Cluster

View cluster (37 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-72

PDB

Domain cluster: rep: SRR1747052_scaffold_19_prodigal-single.1__X__X__00173__D11-79

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7cfdA01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.56	40.0	3.97e-01	74.3%	72.6%
1z1bA01	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.51	31.0	3.39e-01	85.7%	75.4%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3592370	150.5.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like	0.89	64.0	5.21e-01	74.3%	46.7%
3605531	375.1.1.77 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379	0.81	59.0	5.57e-01	77.1%	72.6%
3218198	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.57	39.0	4.35e-01	71.4%	94.5%
3720527	323.1.1.3 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding	0.54	33.0	2.59e-01	95.7%	25.5%
3514631	1016.1.1.1 ↗	alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK	0.54	47.0	3.97e-01	100.0%	83.9%
3739884	1016.1.1.1 ↗	alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK	0.54	47.0	3.93e-01	100.0%	79.1%
3398093	4.1.1.43 ↗	beta barrels › SH3 › SH3 › SH3 › SMN_Tudor	0.53	39.0	4.20e-01	91.4%	90.0%
5016957	101.1.8.1 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase	0.53	40.0	3.01e-01	81.4%	71.4%
2321219	1016.1.1.1 ↗	alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK	0.52	46.0	3.76e-01	100.0%	63.4%
2321841	1016.1.1.1 ↗	alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK	0.52	45.0	3.67e-01	100.0%	71.8%
4946165	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.52	35.0	3.82e-01	91.4%	89.1%
3627869	4.1.1.347 ↗	beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5	0.52	38.0	2.94e-01	77.1%	42.6%
4015071	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.50	38.0	3.81e-01	92.9%	81.4%

D2 high residues 91-162

PDB

Domain cluster: rep: restriction_endonuclease__YP_009345354__Noumeavirus__1955558__D260-319

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF14311.13 best	DUF4379	44.5	2.00e-11	76.4%	96.4%

D3 high residues 304-422

PDB

Domain cluster: rep: LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00294__D106-220

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04480.19 best	DUF559	24.4	3.00e-05	91.6%	46.8%

D4 medium residues 163-233

PDB

Domain cluster: rep: restriction_endonuclease__YP_009345354__Noumeavirus__1955558__D260-319

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF14311.13 best	DUF4379	45.6	8.70e-12	77.5%	98.2%

D5 medium residues 234-303

PDB

Domain cluster: rep: restriction_endonuclease__YP_009345354__Noumeavirus__1955558__D260-319

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF14311.13 best	DUF4379	28.8	1.60e-06	72.9%	92.9%