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core_protein
Euk-VirBroome_virus
core_protein__YP_003717777__Broome_virus__667093
Identity
- Accession:
- YP_003717777 ↗
- Protein ID:
- core_protein
- Kingdom:
- euk
Quality
63.3
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Resentoviricetes›
Reovirales›
Spinareoviridae›
Orthoreovirus›
Broome_reovirus
TaxID: 667093
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 171-330_401-410
Domain cluster:
rep: VP6__YP_009507754__Scophthalmus_maximus_reovirus__994485__D160-334
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03084.20 best | Sigma_1_2 | 65.0 | 1.10e-17 | 98.2% | 33.6% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ulyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 23.0 | 3.09e-01 | 74.1% | 77.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 168906 | 3132.1.1.1 ↗ | alpha complex topology › Core protein VP6 › Core protein VP6 › Core protein VP6 › Sigma_1_2 | 0.97 | 95.0 | 6.77e-01 | 100.0% | 58.8% |
| 158467 | 3132.1.1.1 ↗ | alpha complex topology › Core protein VP6 › Core protein VP6 › Core protein VP6 › Sigma_1_2 | 0.93 | 90.0 | 6.45e-01 | 100.0% | 58.0% |
| 387062 | 3132.1.1.1 ↗ | alpha complex topology › Core protein VP6 › Core protein VP6 › Core protein VP6 › Sigma_1_2 | 0.92 | 89.0 | 6.43e-01 | 100.0% | 58.3% |
| 5060871 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.53 | 37.0 | 4.24e-01 | 74.1% | 95.2% |
D2
high
residues 332-395
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3iylU02 | 1.10.287.1520 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.90 | 65.0 | 7.14e-01 | 82.8% | 90.6% |
| 3a6pA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.64 | 55.0 | 3.03e-01 | 100.0% | 10.3% |
| 6i3mE01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.62 | 52.0 | 4.10e-01 | 93.8% | 86.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 168906 | 3132.1.1.1 ↗ | alpha complex topology › Core protein VP6 › Core protein VP6 › Core protein VP6 › Sigma_1_2 | 0.86 | 80.0 | 4.75e-01 | 100.0% | 15.9% |
| 5060987 | 5048.1.1.1 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP | 0.72 | 60.0 | 4.14e-01 | 87.5% | 43.2% |
| 3587267 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.65 | 58.0 | 3.82e-01 | 100.0% | 48.5% |
| 3241975 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 37.0 | 2.42e-01 | 78.1% | 41.9% |
D3
medium
residues 61-105_123-170