coronavirus_nsp11

Euk-Vir

Bovine_coronavirus

coronavirus_nsp11__NP_742140__Bovine_coronavirus__11128

Identity

88.1 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Nidovirales› Coronaviridae› Betacoronavirus› Bovine_coronavirus

TaxID: 11128

View cluster (23 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 75-119_138-286

PDB

Domain cluster: rep: 3_to_5_exonuclease__NP_828871__SARS_coronavirus_Tor2__227984__D65-287

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06471.20 best	CoV_ExoN	242.5	1.20e-71	78.3%	29.3%
PF06471.20	CoV_ExoN	63.0	3.10e-17	24.2%	8.7%

D2 medium residues 1-59_120-137

PDB

Domain cluster: rep: putative_coronavirus_nsp11__NP_839967__Porcine_epidemic_diarrhea_virus__28295__D1-63_122-135

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06471.20 best	CoV_ExoN	55.7	4.90e-15	92.2%	11.5%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3kd6A00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.53	35.0	2.42e-01	70.1%	33.0%
4oxiA01	3.40.50.12780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain	0.52	42.0	2.73e-01	92.2%	55.7%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3797019	219.1.1.0 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases	0.52	42.0	2.89e-01	90.9%	45.0%
4954972	2003.1.2.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain	0.51	39.0	2.86e-01	85.7%	87.8%

D3 medium residues 298-437_499-513

PDB

Domain cluster: rep: coronavirus_nsp11__NP_740631__Infectious_bronchitis_virus__11120__D299-519

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06471.20 best	CoV_ExoN	195.8	1.70e-57	96.1%	28.0%

D4 medium residues 438-498

PDB

Domain cluster: rep: 3_to_5_exonuclease__YP_009555255__Human_coronavirus_OC43__31631__D438-498

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06471.20 best	CoV_ExoN	72.0	5.90e-20	100.0%	10.9%