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cyclin
Euk-VirWood_mouse_herpesvirus
cyclin__YP_010085945__Wood_mouse_herpesvirus__432370
Identity
- Accession:
- YP_010085945 ↗
- Protein ID:
- cyclin
- Kingdom:
- euk
Quality
87.7
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Rhadinovirus›
Wood_mouse_herpesvirus
TaxID: 432370
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-34_147-251
Domain cluster:
rep: JM152__YP_238455__Macaca_fuscata_rhadinovirus__272551__D151-248
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21608.3 best | V-cyclin_C | 189.7 | 1.20e-56 | 69.8% | 100.0% |
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f5qB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.89 | 84.0 | 8.52e-01 | 99.3% | 98.6% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.87 | 65.0 | 7.40e-01 | 78.4% | 100.0% |
| 1g3nC01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.85 | 70.0 | 7.55e-01 | 89.9% | 100.0% |
| 1zp2A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.82 | 56.0 | 6.11e-01 | 77.7% | 83.5% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.81 | 69.0 | 7.09e-01 | 89.9% | 99.2% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.81 | 53.0 | 6.25e-01 | 74.8% | 94.8% |
| 2b9rA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.78 | 63.0 | 6.37e-01 | 85.6% | 84.3% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.77 | 51.0 | 6.08e-01 | 74.8% | 96.9% |
| 1jkwA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.76 | 54.0 | 6.24e-01 | 72.7% | 100.0% |
| 2i53A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.74 | 55.0 | 6.10e-01 | 76.3% | 96.4% |
| 2ivxB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.73 | 53.0 | 5.29e-01 | 74.1% | 80.0% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.72 | 52.0 | 5.39e-01 | 74.1% | 86.4% |
| 6z4xA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.72 | 50.0 | 4.83e-01 | 74.1% | 63.2% |
| 2i53A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.72 | 53.0 | 5.31e-01 | 76.3% | 76.9% |
| 3h4cA02 | 1.10.472.110 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.70 | 51.0 | 5.63e-01 | 76.3% | 94.5% |
| 1k74D00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.68 | 57.0 | 4.53e-01 | 88.5% | 89.7% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.65 | 28.0 | 3.23e-01 | 83.5% | 50.9% |
| 1at9A00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.60 | 49.0 | 4.09e-01 | 84.9% | 68.7% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.56 | 43.0 | 4.32e-01 | 89.9% | 80.4% |
| 2d3dA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.56 | 31.0 | 3.66e-01 | 71.9% | 84.3% |
| 1eyvB00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.55 | 41.0 | 4.23e-01 | 89.2% | 82.0% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.55 | 45.0 | 4.49e-01 | 99.3% | 87.2% |
| 1bedA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 37.0 | 3.46e-01 | 79.9% | 54.7% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.53 | 43.0 | 4.49e-01 | 84.9% | 98.4% |
| 3wirA02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.52 | 47.0 | 3.45e-01 | 100.0% | 53.6% |
| 3sk9A00 | 1.10.3210.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.52 | 40.0 | 3.45e-01 | 95.0% | 50.4% |
| 3kzqA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 38.0 | 3.37e-01 | 79.1% | 64.1% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2840 | 101.1.10.16 ↗ | alpha arrays › HTH › HTH › Cyclin-like › V-cyclin_C | 0.90 | 66.0 | 7.59e-01 | 75.5% | 98.1% |
| 2842 | 101.1.10.10 ↗ | alpha arrays › HTH › HTH › Cyclin-like › K-cyclin_vir_C | 0.87 | 62.0 | 7.28e-01 | 78.4% | 100.0% |
| 1320273 | 101.1.10.11 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Herp-Cyclin | 0.87 | 65.0 | 7.31e-01 | 78.4% | 97.2% |
| 3343753 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.83 | 56.0 | 6.72e-01 | 74.1% | 100.0% |
| 3366323 | 101.1.10.21 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C | 0.83 | 69.0 | 5.66e-01 | 86.3% | 98.3% |
| 3217304 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.83 | 59.0 | 6.71e-01 | 78.4% | 95.2% |
| 3488467 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.83 | 60.0 | 6.56e-01 | 74.1% | 100.0% |
| 3517691 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.82 | 58.0 | 6.18e-01 | 73.4% | 83.3% |
| 3828609 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.81 | 56.0 | 6.31e-01 | 71.2% | 95.5% |
| 3641832 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.80 | 53.0 | 6.31e-01 | 72.7% | 97.9% |
| 3534849 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.80 | 58.0 | 6.33e-01 | 74.1% | 98.3% |
| 3824693 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.80 | 56.0 | 4.54e-01 | 71.9% | 40.4% |
| 3272263 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.80 | 55.0 | 5.95e-01 | 79.9% | 82.5% |
| 3906253 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.79 | 60.0 | 6.44e-01 | 77.7% | 95.0% |
| 3434992 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.79 | 53.0 | 6.38e-01 | 74.8% | 100.0% |
| 3345138 | 101.1.10.14 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C_2 | 0.79 | 57.0 | 5.96e-01 | 74.8% | 86.9% |
| 4927193 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.79 | 54.0 | 6.09e-01 | 74.8% | 91.4% |
| 3909225 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.79 | 58.0 | 6.45e-01 | 77.0% | 95.5% |
| 3384774 | 101.1.10.21 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C | 0.78 | 69.0 | 5.53e-01 | 93.5% | 95.4% |
| 3369294 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.78 | 65.0 | 5.26e-01 | 87.1% | 96.7% |
| 3339942 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.78 | 55.0 | 5.62e-01 | 72.7% | 76.3% |
| 3358229 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.77 | 61.0 | 6.70e-01 | 96.4% | 100.0% |
| 3432597 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.77 | 54.0 | 6.09e-01 | 71.9% | 100.0% |
| 3345767 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.77 | 60.0 | 6.32e-01 | 81.3% | 92.0% |
| 3241490 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.76 | 58.0 | 6.47e-01 | 79.1% | 100.0% |
| 3422657 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.76 | 58.0 | 6.37e-01 | 81.3% | 96.5% |
| 3172204 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.75 | 55.0 | 5.70e-01 | 75.5% | 82.3% |
| 3923539 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.75 | 54.0 | 5.31e-01 | 73.4% | 71.7% |
| 3476361 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.75 | 53.0 | 5.67e-01 | 71.9% | 90.0% |
| 3353615 | 101.1.10.21 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C | 0.74 | 67.0 | 5.45e-01 | 96.4% | 98.0% |
| 3598087 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.74 | 55.0 | 5.86e-01 | 77.0% | 88.3% |
| 3458503 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.74 | 54.0 | 6.08e-01 | 81.3% | 96.4% |
| 3462581 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.73 | 53.0 | 4.95e-01 | 73.4% | 63.0% |
| 3914125 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.73 | 58.0 | 5.75e-01 | 89.2% | 79.3% |
| 3627307 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.70 | 52.0 | 4.75e-01 | 76.3% | 58.9% |
| 3444342 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.68 | 49.0 | 5.47e-01 | 82.0% | 94.5% |
| 4273747 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.65 | 55.0 | 5.35e-01 | 93.5% | 81.3% |
| 3378930 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.64 | 54.0 | 5.76e-01 | 93.5% | 100.0% |
| 3253480 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.62 | 52.0 | 4.70e-01 | 87.8% | 73.5% |
| 5042604 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.62 | 55.0 | 5.32e-01 | 93.5% | 94.8% |
| 3277203 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 54.0 | 5.18e-01 | 95.0% | 87.7% |
| 3691406 | 551.1.1.0 ↗ | alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain | 0.51 | 34.0 | 3.59e-01 | 81.3% | 75.8% |
| 3306760 | 1075.1.1.6 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_7 | 0.51 | 45.0 | 3.76e-01 | 100.0% | 86.7% |
| 3686449 | 633.6.1.12 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX+ACOX_C_alpha1 | 0.50 | 45.0 | 3.47e-01 | 100.0% | 87.4% |
D2
high
residues 39-140
Domain cluster:
rep: putative_serine_threonine-protein_kinase__YP_003987195__Acanthamoeba_polyphaga_mimivirus__212035__D10-114
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00134.29 best | Cyclin_N | 62.5 | 4.50e-17 | 100.0% | 76.4% |