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dCMP_deaminase

Euk-Vir

Phaeocystis_globosa_virus

dCMP_deaminase__YP_008052537__Phaeocystis_globosa_virus__251749

Identity

Accession:
YP_008052537 ↗
Protein ID:
dCMP_deaminase
Kingdom:
euk

Quality

91.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prymnesiovirus› Phaeocystis_globosa_virus

TaxID: 251749

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-82
PDB
Domain cluster: rep: putative_nucleoside_deaminase__YP_009507199__Tunisvirus_fontaine2__1421067__D5-69
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF14437.13 MafB19-deam 32.0 1.50e-07 93.9% 47.8%
PF00383.30 best dCMP_cyt_deam_1 48.7 8.20e-13 93.9% 63.7%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hvwA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.91 84.0 6.73e-01 97.6% 56.5%
1vq2A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.90 80.0 6.00e-01 92.7% 56.6%
2w4lB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.83 76.0 5.99e-01 97.6% 54.1%
6l08A01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.73 61.0 4.95e-01 96.3% 48.3%
3wknF00 6.20.50.120 Special › Other non-globular › N-terminal domain of TfIIb › 0.60 28.0 3.63e-01 73.2% 76.1%
3g7pA00 1.10.3100.20 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Protein of unknown function DUF269 0.58 41.0 3.44e-01 74.4% 69.0%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.54 39.0 3.93e-01 89.0% 77.1%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.52 38.0 3.21e-01 80.5% 52.7%
4e2aA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 40.0 3.19e-01 86.6% 57.6%
2hoxA01 2.10.25.30 Mainly Beta › Ribbon › Laminin › EGF-like, alliinase 0.50 36.0 3.43e-01 75.6% 62.0%
2jdcA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 40.0 3.34e-01 86.6% 53.8%
1hh2P01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.50 40.0 3.54e-01 89.0% 66.4%
3fynA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 39.0 3.27e-01 86.6% 55.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014386 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.94 90.0 6.82e-01 100.0% 52.4%
4968622 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.93 84.0 6.38e-01 95.1% 65.9%
5080232 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.92 82.0 6.13e-01 92.7% 63.4%
4947404 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.91 80.0 6.12e-01 91.5% 53.0%
4943194 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.91 85.0 6.59e-01 98.8% 60.6%
5042416 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.89 82.0 6.28e-01 97.6% 54.1%
1412120 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.89 79.0 6.49e-01 93.9% 58.1%
3178180 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.88 83.0 6.55e-01 100.0% 58.7%
4179812 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.87 78.0 6.24e-01 93.9% 53.1%
3687854 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.87 82.0 6.19e-01 100.0% 54.3%
4929934 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.86 80.0 6.39e-01 98.8% 60.0%
3505350 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.86 81.0 6.22e-01 100.0% 53.9%
5030015 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.85 75.0 5.74e-01 93.9% 52.4%
3231886 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.81 58.0 4.88e-01 85.4% 46.9%
3953671 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.62 38.0 3.10e-01 78.0% 32.7%
4937318 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 38.0 3.29e-01 79.3% 44.0%
5028156 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 33.0 3.27e-01 86.6% 56.7%
3785396 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 40.0 3.23e-01 86.6% 56.5%
3599363 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.50 35.0 2.99e-01 74.4% 92.0%
5049220 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.50 40.0 3.26e-01 86.6% 60.6%
3946452 213.1.1.31 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.50 40.0 3.38e-01 86.6% 61.4%
4934569 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.50 40.0 3.33e-01 86.6% 63.4%
D2 medium residues 83-135
PDB
Domain cluster: rep: MZ422438.1__QXN67760.1__FPHOBKDP_00006__00006__D2-48
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00383.30 best dCMP_cyt_deam_1 26.3 7.90e-06 62.3% 28.4%