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dbp-1
Euk-VirHyposidra_talaca_nucleopolyhedrovirus
dbp-1__YP_010086280__Hyposidra_talaca_nucleopolyhedrovirus__1070315
Identity
- Accession:
- YP_010086280 ↗
- Protein ID:
- dbp-1
- Kingdom:
- euk
Quality
78.0
mean pLDDT
Taxonomy
TaxID: 1070315
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 32-56_110-133_148-215
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04786.19 best | Baculo_DNA_bind | 40.4 | 3.40e-10 | 61.5% | 26.3% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ti2A01 | 2.20.25.340 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.67 | 24.0 | 3.22e-01 | 70.1% | 56.1% |
| 5z3gZ01 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.60 | 36.0 | 3.52e-01 | 76.9% | 54.8% |
| 1vwxr00 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.55 | 34.0 | 3.40e-01 | 76.9% | 57.6% |
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.54 | 22.0 | 3.41e-01 | 93.2% | 100.0% |
D2
medium
residues 57-109_134-147_216-265
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04786.19 best | Baculo_DNA_bind | 50.7 | 2.40e-13 | 55.6% | 21.1% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lqvA00 | 3.10.450.300 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein | 0.58 | 28.0 | 3.04e-01 | 79.5% | 50.5% |
| 4hz9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 34.0 | 3.37e-01 | 92.3% | 55.3% |
| 1goiB03 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.56 | 25.0 | 3.63e-01 | 91.5% | 96.1% |
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 22.0 | 3.12e-01 | 76.9% | 76.0% |
| 6w0pB01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.53 | 37.0 | 2.79e-01 | 87.2% | 28.7% |
| 2ivwA01 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 31.0 | 3.51e-01 | 90.6% | 85.0% |